rna7272, rna7272 (mRNA) Nannochloropsis gaditana

Overview
Namerna7272
Unique Namerna7272
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length558
Alignment locationCM002471.1:188548..189715 -

Link to JBrowse

Properties
Property NameValue
Productdna topoisomerase i
Orig transcript idgnl|cribi|Naga_100077g1.5200.mrna
Orig protein idgnl|cribi|Naga_100077g1.5200
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:188548..189715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100077g1gene7037Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7272rna7272-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23410.1cds7255Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7272 ID=rna7272|Name=rna7272|organism=Nannochloropsis gaditana|type=mRNA|length=558bp
GAGTCGTGGTGGCGGATGATATCTCGCCAAGTCCCCATGTGCATCCCCGT
TACCCTTTCTCCTTTCCCGGTCCCGTGCCGCAGGAAATCAGCCAAGCGCG
TCCTCCTCCCGTCCTTGGGTGAAAATGCCACCTGCGGGGTCTTCGTCGGC
CCATATGGCCCCTACGTCCGGGACCTCCTGCCCGGCGAGCCCTCTGATGC
TCTGCTCCTGCGAGATCCTGGGGCCGCAAAGGCCTTCTATCAGGACGTGT
GGGCGGACGACGATGCCGGGTTTATGAAGAGTACTAGCGAGGTGCGACGG
GCCCCTGTCCCCGCCGAGTTCACGAACGATCCCGCCTCCATTACCGCAGA
GGCAGTAGAGTCGCTCTTGGAAATGAGCGGTCAGGGAAAAGGGATCACGT
TGGGGCGCGATGCCAGAACCGGCTCGGAAATTTTACTGAGGGCGACCAAG
TACGGACGCTCTTTGGAAGTGACGGTCAACGAGACGCTGCACAGGGTCCA
GGTCCCTCAGAGCATAAATGCCTCGTCCTGTCCCCCCGGTACCCATTTGC
TCCCTCCC
back to top

protein sequence of rna7272

>rna7272-protein ID=rna7272-protein|Name=rna7272|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERG
TNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSL
SPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPS
TYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQ
MEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR
back to top

mRNA from alignment at CM002471.1:188548..189715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7272 ID=rna7272|Name=rna7272|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp|location=Sequence derived from alignment at CM002471.1:188548..189715- (Nannochloropsis gaditana)
CGTTTTTGGTCTGTCCCCGGTGTACGTCTGAGCTGACTAGCGTGTAGGAG
AAAGGGAGAGTCCTATCGCCCGCTCATCATCGCCTCCCTCCCTTGCTCTT
CCCCGCTTCCCCCCGTCCTCCCCCCCGTCCTCCCCCCCGTCCTCCCCCCC
TCCCTTCCCCAGGCCTTGGCCGTGGCCCGCGTCCAAGCCCGAGAACAGTT
TGGCGACACGGACACCGAGCCTGTCGTGGCGTCGGAAAAAGCCGGGAAGG
GAAAGAAAAACCTGGCGAGTGCCACGGCCCAGGAGGCGCACGAAGCAGTA
CGGCCCTCCATCCTGGTGGAGAGCAACCGGTTTCGGACGCCGAAAGAGAT
GGGGTCGGGTTGGATTGCGGACAAGAAAAAATTGGATTTGTACACCTTGA
TCTACGAGCGAACGCTGGCCTCGGTGATGAAAGACGCGAAAATGGAGAGG
AAAACGGTGGCGGTGGAGGCGCGGTCCCCAAGAGGAGGGGAGAGGGGGAC
CAACCACCTTGCGGAGCTGGTGGTGACCGGGCAGACGATCCTGACCCGTG
GCTTCCTTCGCGCCCTCCGAGAGGAAGAACAGGCCCCGACTGCCTCCCTT
TCCCCCACCGGCCCTGGTTCCGACCCCGACGGCCCCCCTCCCTCCCTCTC
TCCCTCCTTCCTGGACCGCCTGACCCCCGGGCAGGCCCTGTCCTGCCTGG
GGACCAAGGTCCTGCTCCACGCCACCAGCCCCCCCTACCGATACACGCAG
GGCTCCTTCGTGCGGACGGTGGAGGAGCTGGGCATCGGTCGGCCTTCCAC
CTATGCCACGATCATCGAGGTCTTGAAGACCCGCAGGTACGTGGGGGGGG
GGCATGGGACGGGCAGAGGGTCTTCCCGAGCCCGGGCCGCCACGCCCGCC
TGAGCCGGCCTTCTCTTGTCTTCCCATACTCCCCAGATATTTTGCCATGA
AAGGCACGGCCATGGTGCCCACCTTGGTGGGGTTCGTGGTGGCGCAGCTG
TTGGAAGGGCATTTTCCTGCCTTTGTGGACGCGGGCTTCACGAGTCAAAT
GGAAGGGCAGTTGGATTTGATTGCCAAGGGGAATGCGGACCGGGTGTCTT
ACCTGGACGAATACTACAGGGGCCTGACGTCGGCCATCGAGACGGTGGAA
GGAGCCATTGACAGGTGA
back to top

Coding sequence (CDS) from alignment at CM002471.1:188548..189715-

>rna7272 ID=rna7272|Name=rna7272|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at CM002471.1:188548..189715- (Nannochloropsis gaditana)
ATATTTTGCCATGAAAGGCACGGCCATGGTGCCCACCTTGGTGGGGTTCG
TGGTGGCGCAGCTGTTGGAAGGGCATTTTCCTGCCTTTGTGGACGCGGGC
TTCACGAGTCAAATGGAAGGGCAGTTGGATTTGATTGCCAAGGGGAATGC
GGACCGGGTGTCTTACCTGGACGAATACTACAGGGGCCTGACGTCGGCCA
TCGAGACGGTGGAAGGAGCCATTGACAGGTGAATGGGGTCGGGTTGGATT
GCGGACAAGAAAAAATTGGATTTGTACACCTTGATCTACGAGCGAACGCT
GGCCTCGGTGATGAAAGACGCGAAAATGGAGAGGAAAACGGTGGCGGTGG
AGGCGCGGTCCCCAAGAGGAGGGGAGAGGGGGACCAACCACCTTGCGGAG
CTGGTGGTGACCGGGCAGACGATCCTGACCCGTGGCTTCCTTCGCGCCCT
CCGAGAGGAAGAACAGGCCCCGACTGCCTCCCTTTCCCCCACCGGCCCTG
GTTCCGACCCCGACGGCCCCCCTCCCTCCCTCTCTCCCTCCTTCCTGGAC
CGCCTGACCCCCGGGCAGGCCCTGTCCTGCCTGGGGACCAAGGTCCTGCT
CCACGCCACCAGCCCCCCCTACCGATACACGCAGGGCTCCTTCGTGCGGA
CGGTGGAGGAGCTGGGCATCGGTCGGCCTTCCACCTATGCCACGATCATC
GAGGTCTTGAAGACCCGCAGATATTTTGCCATGAAAGGCACGGCCATGGT
GCCCACCTTGGTGGGGTTCGTGGTGGCGCAGCTGTTGGAAGGGCATTTTC
CTGCCTTTGTGGACGCGGGCTTCACGAGTCAAATGGAAGGGCAGTTGGAT
TTGATTGCCAAGGGGAATGCGGACCGGGTGTCTTACCTGGACGAATACTA
CAGGGGCCTGACGTCGGCCATCGAGACGGTGGAAGGAGCCATTGACAGGT
GAATGGGGTCGGGTTGGATTGCGGACAAGAAAAAATTGGATTTGTACACC
TTGATCTACGAGCGAACGCTGGCCTCGGTGATGAAAGACGCGAAAATGGA
GAGGAAAACGGTGGCGGTGGAGGCGCGGTCCCCAAGAGGAGGGGAGAGGG
GGACCAACCACCTTGCGGAGCTGGTGGTGACCGGGCAGACGATCCTGACC
CGTGGCTTCCTTCGCGCCCTCCGAGAGGAAGAACAGGCCCCGACTGCCTC
CCTTTCCCCCACCGGCCCTGGTTCCGACCCCGACGGCCCCCCTCCCTCCC
TCTCTCCCTCCTTCCTGGACCGCCTGACCCCCGGGCAGGCCCTGTCCTGC
CTGGGGACCAAGGTCCTGCTCCACGCCACCAGCCCCCCCTACCGATACAC
GCAGGGCTCCTTCGTGCGGACGGTGGAGGAGCTGGGCATCGGTCGGCCTT
CCACCTATGCCACGATCATCGAGGTCTTGAAGACCCGCAG
back to top
Synonyms
Publications