EWM23410.1, cds7255 (CDS) Nannochloropsis gaditana

Overview
NameEWM23410.1
Unique Namecds7255
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:188880..189367 -
Alignment locationCM002471.1:188548..188779 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23410.1
Productdna topoisomerase i
Orig transcript idgnl|cribi|Naga_100077g1.5200.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:188880..189367 -
CM002471.1supercontigCM002471.1:188548..188779 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0016043cellular component organization
GO:0006265DNA topological change
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003916DNA topoisomerase activity
GO:0003677DNA binding
GO:0003917DNA topoisomerase type I activity
Vocabulary: INTERPRO
TermDefinition
IPR023405Topo_IA_core_domain
IPR013824Topo_IA_cen_sub1
IPR013825Topo_IA_cen_sub2
IPR013497Topo_IA_cen
IPR003602Topo_IA_DNA-bd_dom
IPR000380Topo_IA
Homology
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|585104426|gb|EWM23410.1| (dna topoisomerase i [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 3.339e-173
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
            MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR
Sbjct:    1 MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1092508146|ref|WP_070494219.1| (DNA topoisomerase I [Corynebacterium sp. HMSC30G07] >gi|1081233881|gb|OFT77113.1| DNA topoisomerase I [Corynebacterium sp. HMSC30G07])

HSP 1 Score: 162.54 bits (410), Expect = 4.627e-42
Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0
Query:    8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
            D ++  LY LI++RT+AS M DA+     + V       GE  T  +AE   TG+TI   G+LRA                  SD D        + L ++  G AL+  G     H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V  LLE +F A VD  FTS ME +LD IA GN DR  +L  +Y G   A +T+  AI R
Sbjct:  404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVNGISADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|917636532|ref|WP_052205533.1| (DNA topoisomerase I [Corynebacterium riegelii] >gi|914295879|gb|AKV59255.1| DNA topoisomerase I [Corynebacterium riegelii])

HSP 1 Score: 162.155 bits (409), Expect = 5.019e-42
Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0
Query:    8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
            D ++  LY LI++RT+AS M DA+     + V       GE  T  +AE   TG+TI   G+LRA                  SD D        + L ++  G AL+  G     H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V  LLE +F A VD  FTS ME +LD IA GN DR  +L  +Y G   A +T+  AI R
Sbjct:  404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVNGISADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1092476383|ref|WP_070465058.1| (DNA topoisomerase I [Corynebacterium sp. HMSC29G08] >gi|1081238602|gb|OFT81582.1| DNA topoisomerase I [Corynebacterium sp. HMSC29G08])

HSP 1 Score: 161.77 bits (408), Expect = 8.114e-42
Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0
Query:    8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
            D ++  LY LI++RT+AS M DA+     + V       GE  T  +AE   TG+TI   G+LRA                  SD D        + L ++  G AL+  G     H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V  LLE +F A VD  FTS ME +LD IA GN DR  +L  +Y G   A +T+  AI R
Sbjct:  404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVDGITADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|947144875|ref|WP_055917968.1| (DNA topoisomerase I [Leifsonia sp. Leaf336] >gi|945089555|gb|KQR52084.1| DNA topoisomerase I [Leifsonia sp. Leaf336])

HSP 1 Score: 160.229 bits (404), Expect = 2.608e-41
Identity = 101/237 (42.62%), Postives = 134/237 (56.54%), Query Frame = 0
Query:   11 KLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRAL---REEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY------RGLTSAIETVEGAID 238
            +L LY LI++RT+AS M DAK +  +V VEA+   G   GT  +AE   +G  I  RGFL A    R+EE+   A       G D   PP          LTPGQAL+        H T+PP RYT+ S V+T+EELGIGRPST+A+II  +  R Y   +G A+VP+ V F V +LLE +F   V   FT++ME  LD IA G A+RV +L+ +Y      +GL   I+ + G ID
Sbjct:  393 ELRLYDLIWKRTVASQMADAKGQTASVTVEAKIAEGELDGT--VAEFTASGTVITFRGFLNAYEEGRDEERNADA-------GGDAKLPP----------LTPGQALAVEDVAADGHETTPPPRYTEASLVKTLEELGIGRPSTFASIISTIIDRGYVTQRGQALVPSWVAFSVVRLLEDYFADLVQYDFTAEMEDDLDRIADGEAERVDWLNSFYFGSDKHKGLRRVIDNL-GEID 609          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1200416936|gb|OUV34080.1| (DNA topoisomerase I [Balneolaceae bacterium TMED105])

HSP 1 Score: 155.992 bits (393), Expect = 7.184e-40
Identity = 90/232 (38.79%), Postives = 124/232 (53.45%), Query Frame = 0
Query:   10 KKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238
            ++  LY LI++RT+A  M DA++E   V VEAR       G  H+ E   +G+ +L  GF RA  E    P A+          D P P+L          GQ+L C   + + H T PP R+T+ + V+ +E+ GIGRPSTYATII  ++ R Y   +G A+ PT   F V +LLE +FP  V+   TS +E +LD IA+G  D   YL +YY   RGL   +E  E  ID
Sbjct:  387 REYKLYDLIWKRTVAFQMADAQLEFTNVVVEAR-------GDKHVGEFKASGKQVLFPGFFRAYVEGSDDPEAAXDSQ------DSPLPTLDK--------GQSLDCQDIEAVGHETKPPARFTEATLVKELEKQGIGRPSTYATIISTIQDRGYVVTEGKALAPTFTAFAVTKLLEEYFPDIVNTXXTSXLEQKLDGIAQGEVDPTLYLRDYYLGDRGLKEVVEXQESKID 597          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|299470508|emb|CBN78499.2| (DNA topoisomerase I (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 155.992 bits (393), Expect = 8.141e-40
Identity = 91/240 (37.92%), Postives = 133/240 (55.42%), Query Frame = 0
Query:    2 GSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238
            G G   +++   LY L+Y RTLAS M +++ +  TV++ A     G+        L  +G+T +  GFL+A REE    +        G D +        + L  L  G  + C   +   H TSPP R+++ SF++ +E  G+GRPSTYA+II  L+TR Y  ++G ++ P+L GFVVA LL  HFP F D GFT++ME +LD IA+G  +RV YL EYY    GL + + +    ID
Sbjct:  530 GGGRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQE--------TELPLLVEGGKVVCEDARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATID 761          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1054764745|ref|WP_066528786.1| (DNA topoisomerase I [Corynebacterium bouchesdurhonense])

HSP 1 Score: 154.451 bits (389), Expect = 2.546e-39
Identity = 93/232 (40.09%), Postives = 128/232 (55.17%), Query Frame = 0
Query:    8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
            D ++  LY LI++RT+AS M+DA+     V V A + R GER     AE   TG+TI   G+LRA  + +   T                       L +++ G AL         H+T+PP RYT+ S V+ +E+LGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V  L+E +F A VD  FTS ME +LD IA GN +R  +L  +Y G   A +T+  AI R
Sbjct:  398 DAEEFKLYELIWQRTVASQMEDARGNSTKVTV-AGTARSGER-----AEFAATGRTISFPGWLRAYSDTQDKETR----------------------LPQVSEGDALETTKVTADGHSTNPPARYTEASLVKKMEDLGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLMENNFDALVDYDFTSSMEDELDEIAHGNENRTQWLSGFYFGDADARDTMADAIAR 601          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|938261428|gb|KPP96696.1| (DNA topoisomerase TopA [Bacteroidetes bacterium HLUCCA01])

HSP 1 Score: 154.451 bits (389), Expect = 2.806e-39
Identity = 91/222 (40.99%), Postives = 123/222 (55.41%), Query Frame = 0
Query:   14 LYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHL-AELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVE 234
            LY LI++RT+A+ M +A++E    ++ A  P     GT+ + A    TG+ IL  GF RA  E    P A L       D + P P        +L   Q L+    + L H T PP RYT+ S V+ +E+ G+GRPSTYA+II+ +  R Y   +G A+VPT   F V +LLE +FP  VD  FTS+ME +LD IA GN DR  YL+ YY G T   + VE
Sbjct:  395 LYDLIWKRTMATQMANARLEFTNASITASLPPAA--GTDPVNAVFRATGKRILFPGFFRAYVEGSDDPAADLE------DQEKPLP--------KLEIDQKLNPESIEALSHETKPPSRYTEASLVKQLEKEGVGRPSTYASIIDTILNRGYTQKQGNALVPTFTAFAVTELLEKYFPDLVDVQFTSEMENKLDEIASGNEDRTRYLERYYAGETGLRQMVE 600          
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1142779857|ref|WP_077026509.1| (DNA topoisomerase I [Fuerstia marisgermanicae] >gi|1140110773|gb|APZ95330.1| DNA topoisomerase 1 [Fuerstia marisgermanicae])

HSP 1 Score: 153.68 bits (387), Expect = 4.475e-39
Identity = 90/228 (39.47%), Postives = 120/228 (52.63%), Query Frame = 0
Query:   14 LYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238
            LY LI++RT+A+ M DAK+    V + A             A+   +G+T+   GF RA  E    P A+L       D D P P L+ +          + C   + + H T PP RYT+ S VR +E  GIGRPSTYA+II  ++ R Y    G+ +VPT  G  V +LLE HFP  VD GFT+ ME  LD IA GNADR+ YL E+Y    G+   ++  E  ID
Sbjct:  397 LYDLIWKRTMATQMADAKLRFDNVTITAGD-----------ADFRSSGRTVEFPGFFRAYVEGSDDPDAALD------DQDSPLPPLAEN--------DKVGCEDVEAIPHETKPPARYTEASLVRKLEAEGIGRPSTYASIIGTIQDREYVNKNGSQLVPTFKGLAVTKLLEKHFPKLVDFGFTAGMEQTLDDIATGNADRLPYLREFYAGDEGINEQVKKHESEID 599          
The following BLAST results are available for this feature:
BLAST of EWM23410.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104426|gb|EWM23410.1|3.339e-173100.00dna topoisomerase i [Nannochloropsis gaditana][more]
gi|1092508146|ref|WP_070494219.1|4.627e-4241.38DNA topoisomerase I [Corynebacterium sp. HMSC30G07... [more]
gi|917636532|ref|WP_052205533.1|5.019e-4241.38DNA topoisomerase I [Corynebacterium riegelii] >gi... [more]
gi|1092476383|ref|WP_070465058.1|8.114e-4241.38DNA topoisomerase I [Corynebacterium sp. HMSC29G08... [more]
gi|947144875|ref|WP_055917968.1|2.608e-4142.62DNA topoisomerase I [Leifsonia sp. Leaf336] >gi|94... [more]
gi|1200416936|gb|OUV34080.1|7.184e-4038.79DNA topoisomerase I [Balneolaceae bacterium TMED10... [more]
gi|299470508|emb|CBN78499.2|8.141e-4037.92DNA topoisomerase I (Partial), partial [Ectocarpus... [more]
gi|1054764745|ref|WP_066528786.1|2.546e-3940.09DNA topoisomerase I [Corynebacterium bouchesdurhon... [more]
gi|938261428|gb|KPP96696.1|2.806e-3940.99DNA topoisomerase TopA [Bacteroidetes bacterium HL... [more]
gi|1142779857|ref|WP_077026509.1|4.475e-3939.47DNA topoisomerase I [Fuerstia marisgermanicae] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7272rna7272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications