EWM23420.1, cds7252 (CDS) Nannochloropsis gaditana

Overview
NameEWM23420.1
Unique Namecds7252
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:183608..183868 +
Alignment locationCM002471.1:184095..184442 +

Link to JBrowse

Properties
Property NameValue
Start range183608
Start range.
Protein idEWM23420.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101378g2.2068.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:183608..183868 +
CM002471.1supercontigCM002471.1:184095..184442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM23420.1 vs. NCBI_GenBank
Match: gi|585104439|gb|EWM23420.1| (hypothetical protein Naga_101378g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 396.356 bits (1017), Expect = 2.358e-139
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 
Query:    1 SLPPSLPPSVQLFRRYKRKAAFFAGKALVNLQEWAAALSLLESARAVDMLLDPAGKTLESREAASLLARARQGKVKQDKKEKAVWSKAFQLSSEATAEEDREAQPSPPTAATGGTGLPASSLFSSLPASLTGATSGAGASGGGKARAVEGGRRKGKKGGKEGGKEGGKEGWWNEKTEMYTLITLGMAVLGGFAFFSYRNKHK 202
            SLPPSLPPSVQLFRRYKRKAAFFAGKALVNLQEWAAALSLLESARAVDMLLDPAGKTLESREAASLLARARQGKVKQDKKEKAVWSKAFQLSSEATAEEDREAQPSPPTAATGGTGLPASSLFSSLPASLTGATSGAGASGGGKARAVEGGRRKGKKGGKEGGKEGGKEGWWNEKTEMYTLITLGMAVLGGFAFFSYRNKHK
Sbjct:    1 SLPPSLPPSVQLFRRYKRKAAFFAGKALVNLQEWAAALSLLESARAVDMLLDPAGKTLESREAASLLARARQGKVKQDKKEKAVWSKAFQLSSEATAEEDREAQPSPPTAATGGTGLPASSLFSSLPASLTGATSGAGASGGGKARAVEGGRRKGKKGGKEGGKEGGKEGWWNEKTEMYTLITLGMAVLGGFAFFSYRNKHK 202
The following BLAST results are available for this feature:
BLAST of EWM23420.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104439|gb|EWM23420.1|2.358e-139100.00hypothetical protein Naga_101378g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7269rna7269Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications