rna7269, rna7269 (mRNA) Nannochloropsis gaditana

Overview
Namerna7269
Unique Namerna7269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1020
Alignment locationCM002471.1:183608..184664 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101378g2.2068.mrna
Orig protein idgnl|cribi|Naga_101378g2.2068
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:183608..184664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101378g2gene7034Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7269rna7269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23420.1cds7252Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7269 ID=rna7269|Name=rna7269|organism=Nannochloropsis gaditana|type=mRNA|length=1020bp
GCACAGGGCGAGGAGCAGGGCACCCAGCCTTTTTCAGGTTTTCTTTGTAA
AGGAAGCCAGGACGGTCCTTAGAAAGAAACTAACGTAGCCATGGAGTTCA
TCTACGATAGGCCTGGCGTGGATGTGTGCGGTGGGAAAAGCCTAAATTGA
GTGCTGGCGTTCGGCGCTTTTGCGGTGCCCTGCGTGTGGGAGTATCATGT
CTCTTGTTCTATTCCTAACGCTTTTTCTATCCCACGTTTCCCCACGTATT
TTTCGCCCACACTGCGGCACCCGACGACATCACCTACGTTCATTGACGTA
AGTTAAGGTATTGCGACGTATTGGATTCATGGTTGGCACCGAAGAGAACG
TGTCGCCCGTGCTCGTCCCCACAATCTTGCGCGATGGAACAGCAGCAGAG
GGGATGATGACTGACCTGGAAAAAAACGACGTGGTCAAAGAGAAATCACA
ACACCCGCCAACTCTCTTGGAAGGAAAGATGCAAGAACGCAAGGATGGTG
CTGCCGAAGACCCCATCCAGGACAATGAACTCCTGCAACCTGCCCCCGGG
GAAGAGGAGAGGGTCATGCCTGAGGAAGAAGGGATGCCCGTCGACGACGC
TGTGTCGTCCAACTTGCCTCCGTCTTCTCCCCCATCCCCGCCATTGGACA
ACACGGCTTCTACAACCGCCTTGGAGGCGCGGGCGGAGGGACAAGGAGAA
TCATCGGCCGAAAAAGAGGGACATATGGAAAACATGCATCAGGGAGGCAC
GAGTGCAGTGGAAGAGAATATGCCTTCCACGGCGGGGCCCGCGGCTTCCA
GCCCACCAGAAAGCACGCCCGAGGTCATGGACTCCCTGGAAAAAGGCGAG
GAAGTGTCGACCACGTGGGGTTTGGGTGTCATCACAGACATTCGGGCCGG
GAGCACGCCGCCGGCAAAGGGCCCCGGGGAGACATACGTGGTCAAGGCCT
TGACCTGGCGCATGGCGGACGGCAAAGCGCCTACCATGTTCCTGCAGGTA
GATGGAGGGGGGGGCGCGAA
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protein sequence of rna7269

>rna7269-protein ID=rna7269-protein|Name=rna7269|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
SLPPSLPPSVQLFRRYKRKAAFFAGKALVNLQEWAAALSLLESARAVDML
LDPAGKTLESREAASLLARARQGKVKQDKKEKAVWSKAFQLSSEATAEED
REAQPSPPTAATGGTGLPASSLFSSLPASLTGATSGAGASGGGKARAVEG
GRRKGKKGGKEGGKEGGKEGWWNEKTEMYTLITLGMAVLGGFAFFSYRNK
HK
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mRNA from alignment at CM002471.1:183608..184664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7269 ID=rna7269|Name=rna7269|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp|location=Sequence derived from alignment at CM002471.1:183608..184664+ (Nannochloropsis gaditana)
tccctccctccctccctccctccctccgtccagcTCTTCCGTCGGTACAA
GCGGAAGGCCGCCTTCTTCGCGGGCAAGGCTCTGGTCAACTTGCAGGAAT
GGGCGGCAGCTTTGAGCCTCTTGGAGAGCGCGCGGGCCGTAGACATGCTC
CTGGACCCGGCGGGGAAGACGCTGGAAAGCCGAGAGGCCGCCTCGCTCCT
CGCCCGGGCCCGGCAAGGGAAAGTGAAgcaggacaagaaggagaaggcgg
taTGGAGCAAGGTatagggggaaggcgggagggagggcgaagggcgtggg
tgggaagggggaagagcagaAAAGCGgaatgggagagggagggaggcagc
gtcTTGGGGGTCGCGTCAGGCACATGACAGGGTATTCTTCACAccattct
ctctccttccctcctcccgccctttcctccttcccttcccgcttcccttc
ttccttccctccttgttcctTGCCGCCATGCTCTCAGGCCTTCCAGTTGT
CGTCAGAGGCGACGGCTGAAGAGGACCGAGAAGCAcagccttcccccccc
acggcTGCTACCGGCGGTACCGGcctgcctgcttcctctctcttttcctc
cctgcctgcgtCCTTAACAGGAGCGACCTCTGGGGCGGGAGcttccgggg
gggggaaagcacgCGCCGTcgagggtggaagaaggaaagggaagaaggga
gggaaggaaggagggaaggaaggagggaaggaggggtggtggaaCGAAAA
GACGGAGATGTATACGTTGATCACGCTGGGAATGGCGGTCTTGGGCGGCT
TTGCGTTCTTCTCATACCGAAATAAACACAAatagagggaaaagaagtgg
tagaagggggagggagggggaggatagAGGAtgttggaaggaggaagagg
gaattTTCGGACGAGATTCCGCCCAAAGGGCTTACAGGCACGGACGTcgg
ccaggggaaggaggttagCTCGGTGATAGAGTAGGTGCTTGCTGACTATT
GACTTGCACGCCCCCAtcacagaggggagggaataaAATGAACTCGTGAC
CCGTTGC
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Coding sequence (CDS) from alignment at CM002471.1:183608..184664+

>rna7269 ID=rna7269|Name=rna7269|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at CM002471.1:183608..184664+ (Nannochloropsis gaditana)
tccctccctccctccctccctccctccgtccagcTCTTCCGTCGGTACAA
GCGGAAGGCCGCCTTCTTCGCGGGCAAGGCTCTGGTCAACTTGCAGGAAT
GGGCGGCAGCTTTGAGCCTCTTGGAGAGCGCGCGGGCCGTAGACATGCTC
CTGGACCCGGCGGGGAAGACGCTGGAAAGCCGAGAGGCCGCCTCGCTCCT
CGCCCGGGCCCGGCAAGGGAAAGTGAAgcaggacaagaaggagaaggcgg
taTGGAGCAAGGCCTTCCAGTTGTCGTCAGAGGCGACGGCTGAAGAGGAC
CGAGAAGCAcagccttccccccccacggcTGCTACCGGCGGTACCGGcct
gcctgcttcctctctcttttcctccctgcctgcgtCCTTAACAGGAGCGA
CCTCTGGGGCGGGAGcttccgggggggggaaagcacgCGCCGTcgagggt
ggaagaaggaaagggaagaagggagggaaggaaggagggaaggaaggagg
gaaggaggggtggtggaaCGAAAAGACGGAGATGTATACGTTGATCACGC
TGGGAATGGCGGTCTTGGGCGGCTTTGCGTTCTTCTCATACCGAAATAAA
CACAAatagtccctccctccctccctccctccctccgtccagcTCTTCCG
TCGGTACAAGCGGAAGGCCGCCTTCTTCGCGGGCAAGGCTCTGGTCAACT
TGCAGGAATGGGCGGCAGCTTTGAGCCTCTTGGAGAGCGCGCGGGCCGTA
GACATGCTCCTGGACCCGGCGGGGAAGACGCTGGAAAGCCGAGAGGCCGC
CTCGCTCCTCGCCCGGGCCCGGCAAGGGAAAGTGAAgcaggacaagaagg
agaaggcggtaTGGAGCAAGGCCTTCCAGTTGTCGTCAGAGGCGACGGCT
GAAGAGGACCGAGAAGCAcagccttccccccccacggcTGCTACCGGCGG
TACCGGcctgcctgcttcctctctcttttcctccctgcctgcgtCCTTAA
CAGGAGCGACCTCTGGGGCGGGAGcttccgggggggggaaagcacgCGCC
GTcgagggtggaagaaggaaagggaagaagggagggaaggaaggagggaa
ggaaggagggaaggaggggtggtggaaCGAAAAGACGGAGATGTATACGT
TGATCACGCTGGGAATGGCGGTCTTGGGCGGCTTTGCGTTCTTCTCATAC
CGAAATAAACACAAatag
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Synonyms
Publications