EWM23428.1, cds7245 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|585104454|gb|EWM23428.1| (Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0 Query: 1 TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310 TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA Sbjct: 1 TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|553190557|ref|XP_005855215.1| (hypothetical protein NGA_0462220 [Nannochloropsis gaditana CCMP526] >gi|422293849|gb|EKU21149.1| hypothetical protein NGA_0462220 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 26 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA Sbjct: 1 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 285
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|553181045|ref|XP_005853504.1| (hypothetical protein NGA_0462210, partial [Nannochloropsis gaditana CCMP526] >gi|422295557|gb|EKU22856.1| hypothetical protein NGA_0462210, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 Query: 40 LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310 LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA Sbjct: 1 LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 271
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|1173957592|gb|OQS04089.1| (AP-2 complex subunit alpha [Thraustotheca clavata]) HSP 1 Score: 67.3958 bits (163), Expect = 7.993e-9 Identity = 78/303 (25.74%), Postives = 124/303 (40.92%), Query Frame = 0 Query: 7 HHLSHLCGRRASPPSLLPSMVQ--WSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVP--QVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIK 305 + L G AS PS + Q W + ++ QG+LF+ LLQ+ ++ ++G QG L + Y N SP S SA V L +QA L V ++ Q + V C++PF E+ V + N + L LP + F+ + L +DF +W A+ + Q+ F + + L+ I+LLT + + AG+ TG+ +P G ++ V LVRLE + YRLTVR+ HP ++ V +K Sbjct: 664 NELDIFGGAPASKPSGVDPAKQSAWFNKIISTNQGVLFE-NDLLQIGVKQEFRGSQGRLSLFYGNKSPQTLSNVSAVI------------KPVAFLRVQAEELGNEV-ASKQQLKQQIMVECMQPFTQPA---EMTVTY-------SFNGQFTTFDLKLPCVATC--FLEPVKLTNDDFTKRWAALEGQGREQQEVFASSTK------LDAQANIKLLTDTMKFGLGVD------ASGALALAGTFRTGTAAPTGDKISVGCLVRLEANAQAN--------SYRLTVRAVHPDVSVAVKNILK 920
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|673041147|ref|XP_008874534.1| (hypothetical protein H310_10065 [Aphanomyces invadans] >gi|574469744|gb|ETV96757.1| hypothetical protein H310_10065 [Aphanomyces invadans]) HSP 1 Score: 67.3958 bits (163), Expect = 9.319e-9 Identity = 73/286 (25.52%), Postives = 124/286 (43.36%), Query Frame = 0 Query: 26 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVP--QVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLG 309 + W + A+ QG+LF+ ++Q+ ++ ++G QG L + Y N S P + SL + VP L Q + L P ++ Q V V C++PF +E + + + ++ SL L LP F+ + L +DF +W A+ + QD F P + D V +LL L + + + A + TG+ SP G+++ V +LV+LE ++G YR+TVR+ HP ++ V +KL L Sbjct: 682 LAAWFNKIVATNQGVLFE-NDVIQIGVKQEFRGSQGRLGLFYGNKSSQPLT----GLSLNVKN--------VPSLRTQVEEV-AKELAPKQQLKQQVMVECMQPFIQP---VEAVFTYTSGSQQ---------TSLDLKLPCVATSFLEPVKLGLDDFHKRWSALEGQGREQQDAF-PAKWD-------VQAASKLLVDVMKFG----LVDGADVSGGLSMAATFRTGTSSPSGEKISVGILVKLE---------SQG-NSYRVTVRAVHPDVSVAVKNNVKLALA 919 The following BLAST results are available for this feature:
BLAST of EWM23428.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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