rna7262, rna7262 (mRNA) Nannochloropsis gaditana

Overview
Namerna7262
Unique Namerna7262
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002471.1:172789..173864 -

Link to JBrowse

Properties
Property NameValue
ProductClathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain protein
Orig transcript idgnl|cribi|Naga_100238g1.1204.mrna
Orig protein idgnl|cribi|Naga_100238g1.1204
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:172789..173864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100238g1gene7027Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23428.1cds7245Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7262rna7262-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7262 ID=rna7262|Name=rna7262|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGGCGAACCGTACATGCATCCAGCGAGGCATATTTCGGGAAACGCTGGC
ACGATGCATATTTGTGAAGATACCAGCCACGAGGTTTGACCCGTCCTCTC
CGTGCTGTTATAGCTTGTTGGCCTGCTGGGGATGTCCCTCTACCAATGAA
GGGCGTCACGCAATTTCGTGGGGACTAGTGATGTATCGCAAAGGGCATAT
GAAGTACACTTGTCCACGGAAAGCCGTTGCGTGGCGGAATGGAGCCGTAA
ACAAGAGTGGCGTGTATGCCAAAAGATTCCACAACGACGAGTCCCGGTAC
GATCGGACCTTCTGA
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protein sequence of rna7262

>rna7262-protein ID=rna7262-protein|Name=rna7262|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQV
LLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGL
LLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEED
GTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFL
PTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLET
GSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGV
FKAIKLQLGA
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mRNA from alignment at CM002471.1:172789..173864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7262 ID=rna7262|Name=rna7262|organism=Nannochloropsis gaditana|type=mRNA|length=1076bp|location=Sequence derived from alignment at CM002471.1:172789..173864- (Nannochloropsis gaditana)
ACCCCCTGCGCTCTCCCACACCACCTCAGCCACCTATGTGGCCGAAGGGC
ATCCCCCCCCTCCCTCCTTCCCTCCATGGTCCAGTGGTCGTGCACGCTGG
CGGCCTCGGGGCAGGGGCTCCTTTTCCAGTACCCCTCCCTCCTGCAGGTC
CTCCTCCGTCACAACTACCAGGGGCATCAAGGTACTTTGCTGATCGTCTA
CAAGAACGTCTCCCCCCTTCCCTCCTCCCCGACCTCCGCTGCCCCCTCCC
TTCAGTTCCGCACATTCCAAGCCAGCCCGTCCTCCACCGTCCCCGGGCTG
CTCCTTCAAGCTTCTCCGCTCCAAGTGTCGGTCTTGGGACCGGGAGAAGA
AGCCTCGCAGACGGTGCGAGTGGTGTGTCTGGAGCCCTTTGATGCCTCGG
GGGGGGGCATCGAGGTCCTGGTTGAGTTTGGGACGGAAGAGGAGGAGGAC
GGGACGAATGCGGTCCCTGTGCGGTATAGCTTACCTTTGCCCTTGCCTGT
CTCGGTCCTGCATTTTGTGTGGGGCTTGCCCCTGCGTAAAGAGGACTTCC
TGGCCCAGTGGGAGGCGATCACGGTTCCCCAAGTTCAAGATACCTTCTTG
CCGACGAGGGAGGATGGGAAAGGGGAGGGACTGGAGGTGGGACCCTTGAT
TCGTCTGTTAACGAAACAATTCCATCTGCAAACGGTGCCGGAACTGTGTC
AACGCTCGCGACAGGCGCAGACTTGGACGTTTGCGGGGAGCTTGGAGACG
GGGTCCCTGTCCCCCCACGGCAAGCAGTTGCGCGTCCTGGTTCTGGTCCG
ACTGGAGCAGTACGAGGAAGGAGGAGAGCGGTGTGCGCGAGGTCGGAAGG
GCTATCGCCTGACCGTGCGTTCTGAGCATCCGGCGTGTGCCATGGGCGTC
TTCAAAGCAATCAAACTTCAATTGGGCGCGTGACAAGTGCCGCATTGTGT
GTCATGTGGGGTTTAAGGAGAATAAATTTGTGCTACTTGAAAAATGCGTT
CTTGGCGATGGGCAGGCTGAGGGAGCACGTCAACGAACGAAAATGCAGGA
GAATTAATGAAATCTCTGAATTGACG
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Coding sequence (CDS) from alignment at CM002471.1:172789..173864-

>rna7262 ID=rna7262|Name=rna7262|organism=Nannochloropsis gaditana|type=CDS|length=933bp|location=Sequence derived from alignment at CM002471.1:172789..173864- (Nannochloropsis gaditana)
ACCCCCTGCGCTCTCCCACACCACCTCAGCCACCTATGTGGCCGAAGGGC
ATCCCCCCCCTCCCTCCTTCCCTCCATGGTCCAGTGGTCGTGCACGCTGG
CGGCCTCGGGGCAGGGGCTCCTTTTCCAGTACCCCTCCCTCCTGCAGGTC
CTCCTCCGTCACAACTACCAGGGGCATCAAGGTACTTTGCTGATCGTCTA
CAAGAACGTCTCCCCCCTTCCCTCCTCCCCGACCTCCGCTGCCCCCTCCC
TTCAGTTCCGCACATTCCAAGCCAGCCCGTCCTCCACCGTCCCCGGGCTG
CTCCTTCAAGCTTCTCCGCTCCAAGTGTCGGTCTTGGGACCGGGAGAAGA
AGCCTCGCAGACGGTGCGAGTGGTGTGTCTGGAGCCCTTTGATGCCTCGG
GGGGGGGCATCGAGGTCCTGGTTGAGTTTGGGACGGAAGAGGAGGAGGAC
GGGACGAATGCGGTCCCTGTGCGGTATAGCTTACCTTTGCCCTTGCCTGT
CTCGGTCCTGCATTTTGTGTGGGGCTTGCCCCTGCGTAAAGAGGACTTCC
TGGCCCAGTGGGAGGCGATCACGGTTCCCCAAGTTCAAGATACCTTCTTG
CCGACGAGGGAGGATGGGAAAGGGGAGGGACTGGAGGTGGGACCCTTGAT
TCGTCTGTTAACGAAACAATTCCATCTGCAAACGGTGCCGGAACTGTGTC
AACGCTCGCGACAGGCGCAGACTTGGACGTTTGCGGGGAGCTTGGAGACG
GGGTCCCTGTCCCCCCACGGCAAGCAGTTGCGCGTCCTGGTTCTGGTCCG
ACTGGAGCAGTACGAGGAAGGAGGAGAGCGGTGTGCGCGAGGTCGGAAGG
GCTATCGCCTGACCGTGCGTTCTGAGCATCCGGCGTGTGCCATGGGCGTC
TTCAAAGCAATCAAACTTCAATTGGGCGCGTGA
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Synonyms
Publications