EWM23428.1, cds7245 (CDS) Nannochloropsis gaditana

Overview
NameEWM23428.1
Unique Namecds7245
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:172932..173864 -

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Properties
Property NameValue
Protein idEWM23428.1
ProductClathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100238g1.1204.mrna
GbkeyCDS
End range.
End range173864
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:172932..173864 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030117membrane coat
GO:0030131clathrin adaptor complex
Vocabulary: INTERPRO
TermDefinition
IPR013041Coatomer/clathrin_app_Ig-like
IPR015873Clathrin_a/coatomer_app_sub_C
IPR013038Clathrin_a-adaptin_app_Ig-like
Homology
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|585104454|gb|EWM23428.1| (Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310
            TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA
Sbjct:    1 TPCALPHHLSHLCGRRASPPSLLPSMVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310          
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|553190557|ref|XP_005855215.1| (hypothetical protein NGA_0462220 [Nannochloropsis gaditana CCMP526] >gi|422293849|gb|EKU21149.1| hypothetical protein NGA_0462220 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:   26 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310
            MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA
Sbjct:    1 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 285          
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|553181045|ref|XP_005853504.1| (hypothetical protein NGA_0462210, partial [Nannochloropsis gaditana CCMP526] >gi|422295557|gb|EKU22856.1| hypothetical protein NGA_0462210, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:   40 LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 310
            LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA
Sbjct:    1 LLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVPQVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLGA 271          
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|1173957592|gb|OQS04089.1| (AP-2 complex subunit alpha [Thraustotheca clavata])

HSP 1 Score: 67.3958 bits (163), Expect = 7.993e-9
Identity = 78/303 (25.74%), Postives = 124/303 (40.92%), Query Frame = 0
Query:    7 HHLSHLCGRRASPPSLLPSMVQ--WSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVP--QVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIK 305
            + L    G  AS PS +    Q  W   + ++ QG+LF+   LLQ+ ++  ++G QG L + Y N SP   S  SA                V  L +QA  L   V    ++  Q + V C++PF       E+ V +         N     + L LP   +   F+  + L  +DF  +W A+     + Q+ F  + +      L+    I+LLT         +       +     AG+  TG+ +P G ++ V  LVRLE   +           YRLTVR+ HP  ++ V   +K
Sbjct:  664 NELDIFGGAPASKPSGVDPAKQSAWFNKIISTNQGVLFE-NDLLQIGVKQEFRGSQGRLSLFYGNKSPQTLSNVSAVI------------KPVAFLRVQAEELGNEV-ASKQQLKQQIMVECMQPFTQPA---EMTVTY-------SFNGQFTTFDLKLPCVATC--FLEPVKLTNDDFTKRWAALEGQGREQQEVFASSTK------LDAQANIKLLTDTMKFGLGVD------ASGALALAGTFRTGTAAPTGDKISVGCLVRLEANAQAN--------SYRLTVRAVHPDVSVAVKNILK 920          
BLAST of EWM23428.1 vs. NCBI_GenBank
Match: gi|673041147|ref|XP_008874534.1| (hypothetical protein H310_10065 [Aphanomyces invadans] >gi|574469744|gb|ETV96757.1| hypothetical protein H310_10065 [Aphanomyces invadans])

HSP 1 Score: 67.3958 bits (163), Expect = 9.319e-9
Identity = 73/286 (25.52%), Postives = 124/286 (43.36%), Query Frame = 0
Query:   26 MVQWSCTLAASGQGLLFQYPSLLQVLLRHNYQGHQGTLLIVYKNVSPLPSSPTSAAPSLQFRTFQASPSSTVPGLLLQASPLQVSVLGPGEEASQTVRVVCLEPFDASGGGIEVLVEFGTEEEEDGTNAVPVRYSLPLPLPVSVLHFVWGLPLRKEDFLAQWEAITVP--QVQDTFLPTREDGKGEGLEVGPLIRLLTKQFHLQTVPELCQRSRQAQTWTFAGSLETGSLSPHGKQLRVLVLVRLEQYEEGGERCARGRKGYRLTVRSEHPACAMGVFKAIKLQLG 309
            +  W   + A+ QG+LF+   ++Q+ ++  ++G QG L + Y N S  P +      SL  +         VP L  Q   +    L P ++  Q V V C++PF      +E +  + +  ++          SL L LP     F+  + L  +DF  +W A+     + QD F P + D       V    +LL           L   +  +   + A +  TG+ SP G+++ V +LV+LE         ++G   YR+TVR+ HP  ++ V   +KL L 
Sbjct:  682 LAAWFNKIVATNQGVLFE-NDVIQIGVKQEFRGSQGRLGLFYGNKSSQPLT----GLSLNVKN--------VPSLRTQVEEV-AKELAPKQQLKQQVMVECMQPFIQP---VEAVFTYTSGSQQ---------TSLDLKLPCVATSFLEPVKLGLDDFHKRWSALEGQGREQQDAF-PAKWD-------VQAASKLLVDVMKFG----LVDGADVSGGLSMAATFRTGTSSPSGEKISVGILVKLE---------SQG-NSYRVTVRAVHPDVSVAVKNNVKLALA 919          
The following BLAST results are available for this feature:
BLAST of EWM23428.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104454|gb|EWM23428.1|0.000e+0100.00Clathrin adaptor, alpha-adaptin, appendage, Ig-lik... [more]
gi|553190557|ref|XP_005855215.1|0.000e+0100.00hypothetical protein NGA_0462220 [Nannochloropsis ... [more]
gi|553181045|ref|XP_005853504.1|0.000e+0100.00hypothetical protein NGA_0462210, partial [Nannoch... [more]
gi|1173957592|gb|OQS04089.1|7.993e-925.74AP-2 complex subunit alpha [Thraustotheca clavata][more]
gi|673041147|ref|XP_008874534.1|9.319e-925.52hypothetical protein H310_10065 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7262rna7262Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications