rna7246, rna7246 (mRNA) Nannochloropsis gaditana

Overview
Namerna7246
Unique Namerna7246
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length270
Alignment locationCM002471.1:112576..114347 -

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Properties
Property NameValue
Productendoribonuclease l-psp
Orig transcript idgnl|cribi|Naga_100594g2.9590.mrna
Orig protein idgnl|cribi|Naga_100594g2.9590
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:112576..114347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100594g2gene7011Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7246rna7246-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23442.1cds7229Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7246 ID=rna7246|Name=rna7246|organism=Nannochloropsis gaditana|type=mRNA|length=270bp
ATGTATATATATACCCGTATATATACATGCATATATGTAGCTGTCATGGC
AGGTGCGAGCGTGGGAAAGGGCTGGCTCTGGCTTGAGGAGGGGAGGCGGT
GGACGAGGGGAGGGAATGAGGAAGGAAGGGGGGGTAGGAACGGCCCATGG
TGGAAGGATGCCTGCGGGAAGAGTCTCTTCGAAGGCACCGACTTTCTCCG
CTCTCACATGCTGGCGCAGTGGGAAGGAGACGGAAGAATTAGGCGACCCG
GAGTTGAAGGACGGATTTAA
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protein sequence of rna7246

>rna7246-protein ID=rna7246-protein|Name=rna7246|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFR
SMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPG
VPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKL
IALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFV
QVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED
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mRNA from alignment at CM002471.1:112576..114347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7246 ID=rna7246|Name=rna7246|organism=Nannochloropsis gaditana|type=mRNA|length=1772bp|location=Sequence derived from alignment at CM002471.1:112576..114347- (Nannochloropsis gaditana)
CACACACTGGTATATTCACCACGAACCTTCTTCCACATGACCGAAAGATG
AGGCTGTCACGGTTTTGGGACCTCAGATGAACTAAAAAAATGGTGTCGTG
ACGGGCTCCATAGCTGTCTGCTGAATCAACTCCTTGGAACTGTCGTCACG
TTCGTCGCCTTGTCATGTCGGAATAGGAGCGCCAAGGACTTTGTAAAACA
CGCAGCAATTCTCATGTCTCTGCAGTTCCCACATTTTGTCCTGGCCCGGA
GCAAACGACTTCTTCATGGCATTTATTTTCGTCCCGCTTTCCGAGACGAC
TTCAATGTCGATGCAGATGCACGCACGGCACCCTGATAACGTCACACTGC
GTTTTGGCAGCAGCATTTCGAACCCTTACCAACCAGACCATGGACGTCTT
TACATCTTTTTCAGATCCATGTTCAGTCGGACGATACGCCGTCCAGCGCT
GGTCGCACGGTACGTAAAGTCAAGCATTGATAGACTTCGTGCCTGCTGCT
GCAGCTTACCTCCCGCCTCTCCGGTACCCCATAATATTTCCATGCAGGCA
CAACGCGATTTCCTTTCCTCAAAGCACTACGATTGCTGGATCCCAAAAGA
TACACACGGAGGCTAAACTCACGGAAATGGGGCTCAAGCTGCCCCCGCCA
GGGGTGCCCAAAGGAAACTTTGCGATGGCTGTTAAGAGCGGCAAGATGAT
TTACTTGTGTAAGTGGAAGAAGGAAAAGCGAGGTTCTGGTAGCGACGCCA
TCATTGGCACACGCATGAATGGAAATGTAAAGGTTTACTACGTGGGTCAG
CCTTCGTCCTCTAATTCAAATTCCTCTATCCTGCCCCTCTGCAGCGGGCC
ATCTCCCTACGGACGCGAATGGACAGCTCCTCACAGGAAAAGTTGGCGCC
GAAGTCTCCCCAGAGGAAGCTCAGGGTGCTGCGAAATTGATTGCCCTCAA
CCTGCTCTCTTCTCTGAAAAAGGAGGTCGGGGATCTGGACCGAGTACGTC
CACATTTTCCGTTTTTTCCGATGGTCTGTTCTTCTCCCGTGTACCGAGTA
AAGCGCTCACACTGGCATGCACCTTGATGAGTACCTCGATGAAGTTATTC
AATGTGTTAAGGAGGTCAACCCACATTTTCATTCCTCGGTTTCAGGGATT
GTGAGGGAGGGATTTGTCAAACTGACGCCCAATGGGCATCGCCTTTTTCC
TCAGGTCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCAATTGTGTCGATG
GTTTCAGTCAACAACCTATGGTCGTGAACGGTGCCAGCGACTTTTTTGTC
CAAGTCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGCCGTCGGCACCAA
CGCCCTCCCCTTGAACATTCCTGTGGAGATCGAGGCCATCGTGGAGGTAG
AAGACTAGGAGAGGGCAGAAGCAACGAGGGCGATGGGAAAGGGGGCAAAA
CGCGCATCCCCGGGAAAATGTTGCCGCGGGGTCGGGATTTTGATGGCATT
GCCGAGCATGCTGGTGTGGAGAAAGAGGCTGTCAGGCAGGGGGAGGGGGG
AGAGAGACATGGTCAAGCGCCAGGGCCCTAACGTTTCCCCAAAAGAATGA
TGAACTGCTGTCGAACAGCAAAGTTATTGACCGTCGAACAGGGAGGAACA
AACAAAAAAGCAACGGCTGGACAAACGTCCTAAGTCTCATCACGAGGGAC
AGTAAAGTCCACGTCGGGTACAGGCAAGACCACCTTTAAATCCGTCCTTC
AACTCCGGGTCGCCTAATTCTT
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Coding sequence (CDS) from alignment at CM002471.1:112576..114347-

>rna7246 ID=rna7246|Name=rna7246|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at CM002471.1:112576..114347- (Nannochloropsis gaditana)
GTCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCAATTGTGTCGATGGTTT
CAGTCAACAACCTATGGTCGTGAACGGTGCCAGCGACTTTTTTGTCCAAG
TCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGCCGTCGGCACCAACGCC
CTCCCCTTGAACATTCCTGTGGAGATCGAGGCCATCGTGGAGGTAGAAGA
CTAGCGGGCCATCTCCCTACGGACGCGAATGGACAGCTCCTCACAGGAAA
AGTTGGCGCCGAAGTCTCCCCAGAGGAAGCTCAGGGTGCTGCGAAATTGA
TTGCCCTCAACCTGCTCTCTTCTCTGAAAAAGGAGGTCGGGGATCTGGAC
CGAGCACAACGCGATTTCCTTTCCTCAAAGCACTACGATTGCTGGATCCC
AAAAGATACACACGGAGGCTAAACTCACGGAAATGGGGCTCAAGCTGCCC
CCGCCAGGGGTGCCCAAAGGAAACTTTGCGATGGCTGTTAAGAGCGGCAA
GATGATTTACTTGTATGGCATTTATTTTCGTCCCGCTTTCCGAGACGACT
TCAATGTCGATGCAGATGCACGCACGGCACCCTGATAACGTCACACTGCG
TTTTGGCAGCAGCATTTCGAACCCTTACCAACCAGACCATGGACGTCTTT
ACATCTTTTTCAGATCCATGTTCAGTCGGACGATACGCCGTCCAGCGCTG
GTCGCACGGTCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCAATTGTGTC
GATGGTTTCAGTCAACAACCTATGGTCGTGAACGGTGCCAGCGACTTTTT
TGTCCAAGTCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGCCGTCGGCA
CCAACGCCCTCCCCTTGAACATTCCTGTGGAGATCGAGGCCATCGTGGAG
GTAGAAGACTAGCGGGCCATCTCCCTACGGACGCGAATGGACAGCTCCTC
ACAGGAAAAGTTGGCGCCGAAGTCTCCCCAGAGGAAGCTCAGGGTGCTGC
GAAATTGATTGCCCTCAACCTGCTCTCTTCTCTGAAAAAGGAGGTCGGGG
ATCTGGACCGAGCACAACGCGATTTCCTTTCCTCAAAGCACTACGATTGC
TGGATCCCAAAAGATACACACGGAGGCTAAACTCACGGAAATGGGGCTCA
AGCTGCCCCCGCCAGGGGTGCCCAAAGGAAACTTTGCGATGGCTGTTAAG
AGCGGCAAGATGATTTACTTGTATGGCATTTATTTTCGTCCCGCTTTCCG
AGACGACTTCAATGTCGATGCAGATGCACGCACGGCACCCTGATAACGTC
ACACTGCGTTTTGGCAGCAGCATTTCGAACCCTTACCAACCAGACCATGG
ACGTCTTTACATCTTTTTCAGATCCATGTTCAGTCGGACGATACGCCGTC
CAGCGCTGGTCGCACGGTCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCA
ATTGTGTCGATGGTTTCAGTCAACAACCTATGGTCGTGAACGGTGCCAGC
GACTTTTTTGTCCAAGTCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGC
CGTCGGCACCAACGCCCTCCCCTTGAACATTCCTGTGGAGATCGAGGCCA
TCGTGGAGGTAGAAGACTAGCGGGCCATCTCCCTACGGACGCGAATGGAC
AGCTCCTCACAGGAAAAGTTGGCGCCGAAGTCTCCCCAGAGGAAGCTCAG
GGTGCTGCGAAATTGATTGCCCTCAACCTGCTCTCTTCTCTGAAAAAGGA
GGTCGGGGATCTGGACCGAGCACAACGCGATTTCCTTTCCTCAAAGCACT
ACGATTGCTGGATCCCAAAAGATACACACGGAGGCTAAACTCACGGAAAT
GGGGCTCAAGCTGCCCCCGCCAGGGGTGCCCAAAGGAAACTTTGCGATGG
CTGTTAAGAGCGGCAAGATGATTTACTTGTATGGCATTTATTTTCGTCCC
GCTTTCCGAGACGACTTCAATGTCGATGCAGATGCACGCACGGCACCCTG
ATAACGTCACACTGCGTTTTGGCAGCAGCATTTCGAACCCTTACCAACCA
GACCATGGACGTCTTTACATCTTTTTCAGATCCATGTTCAGTCGGACGAT
ACGCCGTCCAGCGCTGGTCGCACGGTCAAGCGCATTGTCAAGCTGGTAGG
CTTCGTCAATTGTGTCGATGGTTTCAGTCAACAACCTATGGTCGTGAACG
GTGCCAGCGACTTTTTTGTCCAAGTCTTCGGCGACAAAGGCGTGCATGCC
CGGAGTGCCGTCGGCACCAACGCCCTCCCCTTGAACATTCCTGTGGAGAT
CGAGGCCATCGTGGAGGTAGAAGACTAGCGGGCCATCTCCCTACGGACGC
GAATGGACAGCTCCTCACAGGAAAAGTTGGCGCCGAAGTCTCCCCAGAGG
AAGCTCAGGGTGCTGCGAAATTGATTGCCCTCAACCTGCTCTCTTCTCTG
AAAAAGGAGGTCGGGGATCTGGACCGAGCACAACGCGATTTCCTTTCCTC
AAAGCACTACGATTGCTGGATCCCAAAAGATACACACGGAGGCTAAACTC
ACGGAAATGGGGCTCAAGCTGCCCCCGCCAGGGGTGCCCAAAGGAAACTT
TGCGATGGCTGTTAAGAGCGGCAAGATGATTTACTTGTATGGCATTTATT
TTCGTCCCGCTTTCCGAGACGACTTCAATGTCGATGCAGATGCACGCACG
GCACCCTGATAACGTCACACTGCGTTTTGGCAGCAGCATTTCGAACCCTT
ACCAACCAGACCATGGACGTCTTTACATCTTTTTCAGATCCATGTTCAGT
CGGACGATACGCCGTCCAGCGCTGGTCGCACG
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Synonyms
Publications