EWM23442.1, cds7229 (CDS) Nannochloropsis gaditana

Overview
NameEWM23442.1
Unique Namecds7229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:113889..114082 -
Alignment locationCM002471.1:113640..113800 -
Alignment locationCM002471.1:113355..113503 -
Alignment locationCM002471.1:112940..113143 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23442.1
Productendoribonuclease l-psp
Orig transcript idgnl|cribi|Naga_100594g2.9590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:113889..114082 -
CM002471.1supercontigCM002471.1:113640..113800 -
CM002471.1supercontigCM002471.1:113355..113503 -
CM002471.1supercontigCM002471.1:112940..113143 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006175YjgF/YER057c/UK114
IPR013813Endoribo_LPSP/chorism_mut-like
Homology
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|585104474|gb|EWM23442.1| (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 482.641 bits (1241), Expect = 2.082e-172
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED
Sbjct:    1 MAFIFVPLSETTSMSMQMHARHPDNVTLRFGSSISNPYQPDHGRLYIFFRSMFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|553188095|ref|XP_005854737.1| (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >gi|422294326|gb|EKU21626.1| endoribonuclease l-psp [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 373.629 bits (958), Expect = 4.934e-130
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:   52 MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED
Sbjct:    1 MFSRTIRRPALVARHNAISFPQSTTIAGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|299116967|emb|CBN75071.1| (putative Translation Initiation Inhibitor [Ectocarpus siliculosus])

HSP 1 Score: 221.476 bits (563), Expect = 5.326e-70
Identity = 100/155 (64.52%), Postives = 128/155 (82.58%), Query Frame = 0
Query:   81 QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            + +HTEAKL E+G++LP P  P GNF M V++G ++Y SGHLPT   G+  TGKVG E++ EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE +D
Sbjct:   17 RSVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDD 171          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|585104425|gb|EWM23409.1| (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 216.083 bits (549), Expect = 2.341e-68
Identity = 101/142 (71.13%), Postives = 124/142 (87.32%), Query Frame = 0
Query:   83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP 224
            +  EA+L ++G+ LP    PKGN+A+AV++G +++L+GH+P   NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP
Sbjct:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIP 143          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|568024052|gb|ETL98094.1| (hypothetical protein L917_04769 [Phytophthora parasitica])

HSP 1 Score: 213.001 bits (541), Expect = 7.903e-67
Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0
Query:   69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            I   +S ++A + + +H E K+ E+G  LP    PKGN+  +V+SG  IY++GHLP  A G L+ GKVG +++PE+   AA  +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED
Sbjct:    5 IRMTKSRSLASAVRNVHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|570332508|gb|ETO80456.1| (hypothetical protein F444_05101 [Phytophthora parasitica P1976])

HSP 1 Score: 212.616 bits (540), Expect = 9.939e-67
Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0
Query:   69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            I   +S ++A + + +H E K+ E+G  LP    PKGN+  +V+SG  IY++GHLP  A G L+ GKVG +++PE+   AA  +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED
Sbjct:    5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|675187047|ref|XP_008902408.1| (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|566028793|gb|ETI51704.1| hypothetical protein F443_05052 [Phytophthora parasitica P1569] >gi|567966071|gb|ETK91529.1| hypothetical protein L915_04923 [Phytophthora parasitica] >gi|567994790|gb|ETL44940.1| hypothetical protein L916_04870 [Phytophthora parasitica] >gi|568054480|gb|ETM51260.1| hypothetical protein L914_04873 [Phytophthora parasitica] >gi|568097696|gb|ETN12438.1| hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|570956494|gb|ETP21488.1| hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >gi|970663543|gb|KUG00690.1| hypothetical protein AM587_10006148 [Phytophthora nicotianae])

HSP 1 Score: 212.616 bits (540), Expect = 1.085e-66
Identity = 98/168 (58.33%), Postives = 132/168 (78.57%), Query Frame = 0
Query:   69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            I   +S ++A + + +H E K+ E+G  LP    PKGN+  +V+SG  IY++GHLP  A G L+ GKVG +++PE+   AA  +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED
Sbjct:    5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|570991647|gb|ETP49338.1| (hypothetical protein F442_05119 [Phytophthora parasitica P10297])

HSP 1 Score: 209.534 bits (532), Expect = 1.625e-65
Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 0
Query:   69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            I   +S ++A + + +H E K+ E+G  LP     KGN+  +V+SG  IY++GHLP  A G L+ GKVG +++PE+   AA  +AL+L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED
Sbjct:    5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEHKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|673021132|ref|XP_008864527.1| (hypothetical protein H310_02708 [Aphanomyces invadans] >gi|574479458|gb|ETW06452.1| hypothetical protein H310_02708 [Aphanomyces invadans])

HSP 1 Score: 205.682 bits (522), Expect = 5.285e-64
Identity = 93/158 (58.86%), Postives = 126/158 (79.75%), Query Frame = 0
Query:   78 AGSQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            A ++ +HTEA++ E+G  LP    PKGN+  +V+ G +I+ +GHLP  A G+L+ GKVG +++PEE   AA  +AL L+++LK+E+GDLDRVKRIVK+VGFVNCVDGF+ QP V+NG SD  V++FGD+G+HARSAVGTNALPL IPVE+E IVE++D
Sbjct:   11 AAARFVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168          
BLAST of EWM23442.1 vs. NCBI_GenBank
Match: gi|970659151|gb|KUF96816.1| (hypothetical protein AM588_10007953 [Phytophthora nicotianae])

HSP 1 Score: 202.986 bits (515), Expect = 6.645e-63
Identity = 96/168 (57.14%), Postives = 128/168 (76.19%), Query Frame = 0
Query:   69 ISFPQSTTIAGS-QKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
            I   +S ++A + + +H E K+ E+G  LP    PKGN+  +V+SG  IY++GHLP  A G L+ GKVG +++PE+   AA      L+++LK+EVGDLD++KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EAIVE+ED
Sbjct:    5 IRMTKSRSLASAVRNVHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAT----TLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 168          
The following BLAST results are available for this feature:
BLAST of EWM23442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104474|gb|EWM23442.1|2.082e-172100.00endoribonuclease l-psp [Nannochloropsis gaditana][more]
gi|553188095|ref|XP_005854737.1|4.934e-130100.00endoribonuclease l-psp [Nannochloropsis gaditana C... [more]
gi|299116967|emb|CBN75071.1|5.326e-7064.52putative Translation Initiation Inhibitor [Ectocar... [more]
gi|585104425|gb|EWM23409.1|2.341e-6871.13endoribonuclease l-psp [Nannochloropsis gaditana][more]
gi|568024052|gb|ETL98094.1|7.903e-6758.33hypothetical protein L917_04769 [Phytophthora para... [more]
gi|570332508|gb|ETO80456.1|9.939e-6758.33hypothetical protein F444_05101 [Phytophthora para... [more]
gi|675187047|ref|XP_008902408.1|1.085e-6658.33hypothetical protein PPTG_09268 [Phytophthora para... [more]
gi|570991647|gb|ETP49338.1|1.625e-6557.74hypothetical protein F442_05119 [Phytophthora para... [more]
gi|673021132|ref|XP_008864527.1|5.285e-6458.86hypothetical protein H310_02708 [Aphanomyces invad... [more]
gi|970659151|gb|KUF96816.1|6.645e-6357.14hypothetical protein AM588_10007953 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7246rna7246Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications