EWM23460.1, cds7213 (CDS) Nannochloropsis gaditana

Overview
NameEWM23460.1
Unique Namecds7213
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:68050..68433 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23460.1
Productnadh dehydrogenase subunit c
Partialtrue
Orig transcript idgnl|cribi|Naga_103701g1.7468.mrna
GbkeyCDS
End range.
End range68433
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:68050..68433 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|585104513|gb|EWM23460.1| (nadh dehydrogenase subunit c, partial [Nannochloropsis gaditana])

HSP 1 Score: 252.292 bits (643), Expect = 8.073e-85
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ 127
            NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ
Sbjct:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ 127          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|435856282|ref|YP_007317126.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|542687493|ref|YP_008519373.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis salina] >gi|429126181|gb|AFZ64351.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|472833736|gb|AGI48952.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis salina] >gi|472833845|gb|AGI49058.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|613433087|gb|AHX24914.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis gaditana] >gi|613433219|gb|AHX25035.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis salina])

HSP 1 Score: 125.561 bits (314), Expect = 5.639e-34
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL
Sbjct:   18 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687610|ref|YP_008519443.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oculata] >gi|472833808|gb|AGI49022.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oculata] >gi|613433173|gb|AHX24992.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis oculata])

HSP 1 Score: 117.857 bits (294), Expect = 6.668e-31
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KIFKDELI+TVHPK+LYGV+KFLKYN LCQFNCLTAISGTDYPERENRFEV+YELL
Sbjct:   18 NAKIFKDELIITVHPKNLYGVIKFLKYNTLCQFNCLTAISGTDYPERENRFEVAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|545906486|ref|YP_008519478.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica] >gi|472833881|gb|AGI49093.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica])

HSP 1 Score: 116.701 bits (291), Expect = 2.152e-30
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDYPERENRFE++YELL
Sbjct:   18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYPERENRFEIAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|472833663|gb|AGI48881.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica] >gi|613433130|gb|AHX24953.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis oceanica])

HSP 1 Score: 116.701 bits (291), Expect = 2.152e-30
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDYPERENRFE++YELL
Sbjct:   18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYPERENRFEIAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687440|ref|YP_008519337.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis granulata] >gi|472833699|gb|AGI48916.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis granulata])

HSP 1 Score: 114.775 bits (286), Expect = 1.233e-29
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KIFKDELI+TVHPK+LY ++KFLKYN LCQFNCLTAISGTDYPERENRFEV+YELL
Sbjct:   18 NAKIFKDELIITVHPKNLYSIIKFLKYNTLCQFNCLTAISGTDYPERENRFEVAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687550|ref|YP_008519408.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis limnetica] >gi|472833772|gb|AGI48987.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis limnetica])

HSP 1 Score: 114.005 bits (284), Expect = 2.144e-29
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDY ERENRFEV+YELL
Sbjct:   18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYLERENRFEVAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1000883779|gb|AML60760.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Monodopsis sp. MarTras21])

HSP 1 Score: 100.908 bits (250), Expect = 2.876e-24
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+KI  +E+ILTVHPK+L GV+ FLK+N+LCQF CLTAISGTDYPERENRFEV+YELL
Sbjct:   18 NAKILDNEIILTVHPKNLIGVITFLKHNVLCQFICLTAISGTDYPERENRFEVAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1004348255|ref|YP_009237672.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Trachydiscus minutus] >gi|1000883698|gb|AML60681.1| NADH dehydrogenase subunit 9 (mitochondrion) [Trachydiscus minutus])

HSP 1 Score: 95.5153 bits (236), Expect = 4.197e-22
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            N+K+  DE+I+ VHPK+LY V+ F K ++LCQ+NCL AISGTDYPERENRFEV+YELL
Sbjct:   18 NAKLLGDEIIIVVHPKNLYNVINFFKNHVLCQYNCLAAISGTDYPERENRFEVAYELL 75          
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1200347834|gb|OUU67740.1| (NADH-quinone oxidoreductase subunit C [Synechococcus sp. TMED66])

HSP 1 Score: 67.0106 bits (162), Expect = 4.554e-11
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    3 KIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
            ++  +E+I TVHP+ +  V+ FL+ ++ CQ+  L+AI+GTDYPER +RFE+SYELL
Sbjct:   25 QVLNNEVICTVHPQYIPFVLTFLRDHVNCQYKVLSAITGTDYPERSDRFEISYELL 80          
The following BLAST results are available for this feature:
BLAST of EWM23460.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104513|gb|EWM23460.1|8.073e-85100.00nadh dehydrogenase subunit c, partial [Nannochloro... [more]
gi|435856282|ref|YP_007317126.1|5.639e-34100.00NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|542687610|ref|YP_008519443.1|6.668e-3189.66NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|545906486|ref|YP_008519478.1|2.152e-3086.21NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|472833663|gb|AGI48881.1|2.152e-3086.21NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|542687440|ref|YP_008519337.1|1.233e-2986.21NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|542687550|ref|YP_008519408.1|2.144e-2986.21NADH dehydrogenase subunit 9 (mitochondrion) [Nann... [more]
gi|1000883779|gb|AML60760.1|2.876e-2477.59NADH dehydrogenase subunit 9 (mitochondrion) [Mono... [more]
gi|1004348255|ref|YP_009237672.1|4.197e-2268.97NADH dehydrogenase subunit 9 (mitochondrion) [Trac... [more]
gi|1200347834|gb|OUU67740.1|4.554e-1151.79NADH-quinone oxidoreductase subunit C [Synechococc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7230rna7230Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications