rna7230, rna7230 (mRNA) Nannochloropsis gaditana

Overview
Namerna7230
Unique Namerna7230
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length318
Alignment locationCM002471.1:68025..68433 -

Link to JBrowse

Properties
Property NameValue
Productnadh dehydrogenase subunit c
Orig transcript idgnl|cribi|Naga_103701g1.7468.mrna
Orig protein idgnl|cribi|Naga_103701g1.7468
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:68025..68433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103701g1gene6994Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23460.1cds7213Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7230rna7230-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7230 ID=rna7230|Name=rna7230|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGAAGCCAGAGATATTTTCGTCCATGGAGCCACCGCCCAGCACACCTCC
GCGACCGGCGACTTTTTCGTCTTCCCACTTCTTGTGTACGGAAAAGACCA
AACAGGGCAAGGAGAAAGCCGAGCCTTCCCCATCTTCGTCAACATCAGCG
GGGACATTGACATTGCACTTGAGAAGAAATCATGCCGTGGATGCTTCGAC
ATTACTCGGCATGTTGCCCTTCTTGTTCGGCCCTGTACTGGGCCCAGAGT
CCTGTCTGGCCGTAGCAGGAACACAGAAGGGGAAATGTCGGCTCTGCGAG
GGCTTGCTGCGCTCGTAA
back to top

protein sequence of rna7230

>rna7230-protein ID=rna7230-protein|Name=rna7230|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENR
FEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTT
LLLPPSLIGILTGRAIPTNLTVPYGHQ
back to top

mRNA from alignment at CM002471.1:68025..68433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7230 ID=rna7230|Name=rna7230|organism=Nannochloropsis gaditana|type=mRNA|length=409bp|location=Sequence derived from alignment at CM002471.1:68025..68433- (Nannochloropsis gaditana)
AATTCTAAAATTTTTAAAGATGAATTAATATTGACCGTTCATCCAAAAGA
TTTATATGGTGTTATGAAATTTTTAAAATACAACATGTTATGCCAATTTA
ATTGCTTAACAGCTATATCGGGAACCGATTACCCTGAAAGAGAAAATCGG
TTTGAGGTTTCATATGAGCTGTTAATTCCCTCCCTCCCTCCTTCCTCCCT
TTTCTCGCTTTCAAATCCTGTCTTCTTCTCGCCCTCTTTGCTCAGCATGA
CTCAACTAGATCCCTCAAGCTTTCTCTCCTTCCCTCCCTCCCCCACTACC
TTACTCCTTCCCCCTTCCCTCATTGGTATCCTGACTGGACGTGCCATTCC
CACCAATCTCACTGTACCCTACGGTCATCAATGACTTGCATCTCACCAAG
CCCCTCACG
back to top

Coding sequence (CDS) from alignment at CM002471.1:68025..68433-

>rna7230 ID=rna7230|Name=rna7230|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002471.1:68025..68433- (Nannochloropsis gaditana)
AATTCTAAAATTTTTAAAGATGAATTAATATTGACCGTTCATCCAAAAGA
TTTATATGGTGTTATGAAATTTTTAAAATACAACATGTTATGCCAATTTA
ATTGCTTAACAGCTATATCGGGAACCGATTACCCTGAAAGAGAAAATCGG
TTTGAGGTTTCATATGAGCTGTTAATTCCCTCCCTCCCTCCTTCCTCCCT
TTTCTCGCTTTCAAATCCTGTCTTCTTCTCGCCCTCTTTGCTCAGCATGA
CTCAACTAGATCCCTCAAGCTTTCTCTCCTTCCCTCCCTCCCCCACTACC
TTACTCCTTCCCCCTTCCCTCATTGGTATCCTGACTGGACGTGCCATTCC
CACCAATCTCACTGTACCCTACGGTCATCAATGA
back to top
Synonyms
Publications