EWM23460.1, cds7213 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|585104513|gb|EWM23460.1| (nadh dehydrogenase subunit c, partial [Nannochloropsis gaditana]) HSP 1 Score: 252.292 bits (643), Expect = 8.073e-85 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ 127
NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ
Sbjct: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELLIPSLPPSSLFSLSNPVFFSPSLLSMTQLDPSSFLSFPPSPTTLLLPPSLIGILTGRAIPTNLTVPYGHQ 127
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|435856282|ref|YP_007317126.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|542687493|ref|YP_008519373.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis salina] >gi|429126181|gb|AFZ64351.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|472833736|gb|AGI48952.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis salina] >gi|472833845|gb|AGI49058.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis gaditana] >gi|613433087|gb|AHX24914.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis gaditana] >gi|613433219|gb|AHX25035.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis salina]) HSP 1 Score: 125.561 bits (314), Expect = 5.639e-34 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL
Sbjct: 18 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687610|ref|YP_008519443.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oculata] >gi|472833808|gb|AGI49022.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oculata] >gi|613433173|gb|AHX24992.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis oculata]) HSP 1 Score: 117.857 bits (294), Expect = 6.668e-31 Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KIFKDELI+TVHPK+LYGV+KFLKYN LCQFNCLTAISGTDYPERENRFEV+YELL
Sbjct: 18 NAKIFKDELIITVHPKNLYGVIKFLKYNTLCQFNCLTAISGTDYPERENRFEVAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|545906486|ref|YP_008519478.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica] >gi|472833881|gb|AGI49093.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica]) HSP 1 Score: 116.701 bits (291), Expect = 2.152e-30 Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDYPERENRFE++YELL
Sbjct: 18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYPERENRFEIAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|472833663|gb|AGI48881.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis oceanica] >gi|613433130|gb|AHX24953.1| NADH dehydrogenase subunit 9 (mitochondrion) (mitochondrion) [Nannochloropsis oceanica]) HSP 1 Score: 116.701 bits (291), Expect = 2.152e-30 Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDYPERENRFE++YELL
Sbjct: 18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYPERENRFEIAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687440|ref|YP_008519337.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis granulata] >gi|472833699|gb|AGI48916.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis granulata]) HSP 1 Score: 114.775 bits (286), Expect = 1.233e-29 Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KIFKDELI+TVHPK+LY ++KFLKYN LCQFNCLTAISGTDYPERENRFEV+YELL
Sbjct: 18 NAKIFKDELIITVHPKNLYSIIKFLKYNTLCQFNCLTAISGTDYPERENRFEVAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|542687550|ref|YP_008519408.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis limnetica] >gi|472833772|gb|AGI48987.1| NADH dehydrogenase subunit 9 (mitochondrion) [Nannochloropsis limnetica]) HSP 1 Score: 114.005 bits (284), Expect = 2.144e-29 Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KIFKDELI+TVHPK+LYG++KFLKYN LCQFNCLTAISGTDY ERENRFEV+YELL
Sbjct: 18 NAKIFKDELIITVHPKNLYGIIKFLKYNTLCQFNCLTAISGTDYLERENRFEVAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1000883779|gb|AML60760.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Monodopsis sp. MarTras21]) HSP 1 Score: 100.908 bits (250), Expect = 2.876e-24 Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+KI +E+ILTVHPK+L GV+ FLK+N+LCQF CLTAISGTDYPERENRFEV+YELL
Sbjct: 18 NAKILDNEIILTVHPKNLIGVITFLKHNVLCQFICLTAISGTDYPERENRFEVAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1004348255|ref|YP_009237672.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Trachydiscus minutus] >gi|1000883698|gb|AML60681.1| NADH dehydrogenase subunit 9 (mitochondrion) [Trachydiscus minutus]) HSP 1 Score: 95.5153 bits (236), Expect = 4.197e-22 Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0
Query: 1 NSKIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
N+K+ DE+I+ VHPK+LY V+ F K ++LCQ+NCL AISGTDYPERENRFEV+YELL
Sbjct: 18 NAKLLGDEIIIVVHPKNLYNVINFFKNHVLCQYNCLAAISGTDYPERENRFEVAYELL 75
BLAST of EWM23460.1 vs. NCBI_GenBank
Match: gi|1200347834|gb|OUU67740.1| (NADH-quinone oxidoreductase subunit C [Synechococcus sp. TMED66]) HSP 1 Score: 67.0106 bits (162), Expect = 4.554e-11 Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0
Query: 3 KIFKDELILTVHPKDLYGVMKFLKYNMLCQFNCLTAISGTDYPERENRFEVSYELL 58
++ +E+I TVHP+ + V+ FL+ ++ CQ+ L+AI+GTDYPER +RFE+SYELL
Sbjct: 25 QVLNNEVICTVHPQYIPFVLTFLRDHVNCQYKVLSAITGTDYPERSDRFEISYELL 80 The following BLAST results are available for this feature:
BLAST of EWM23460.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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