rna7223, rna7223 (mRNA) Nannochloropsis gaditana

Overview
Namerna7223
Unique Namerna7223
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length903
Alignment locationCM002471.1:50450..51699 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100651g1.737.mrna
Orig protein idgnl|cribi|Naga_100651g1.737
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:50450..51699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100651g1gene6986Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7223rna7223-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23467.1cds7206Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7223 ID=rna7223|Name=rna7223|organism=Nannochloropsis gaditana|type=mRNA|length=903bp
ATGTATGCTGAATGTTTTCTACTGAAATGTTCACTCACTCGTTTTCTTCA
GGCGCGTTCTTTTCTGTCAGCCAGGGCTTTTCTTATTGTTGTGGGTGTCA
GTCACTTATCCTGGACCGTGAAAAAGATGTGGCCCACCATTAAAAGTCGT
GTCCTGCTTCAATGCCTAACTGGCTTCACCGCCGTTTTGTCACCTTGGCA
GAGAAATTGGCGGCAATTTCTTGTGTTTCTCAGACACGGATGCTTCCCAT
ATACTGTGAAAGCTTTAATAAGCCCCGCGCGGCACACCTTACAAAACTAC
GGTGCTCAGCAATATTTCTGTCGTCCTTCACACGTCGTACTTTATCTTCC
TAGGCGCCGGCCGGGGGGGTCGGCACGTTGGTCTGCGTGGAAAGGAGAGG
GCAACCCAGAGCGACCACGCCAAAAAAAAAGCTTCGATTTCCGAATCATT
TGGAGCACACACCCGCCGATAATGGAGCTTGATAAACCCTCTGGCATGTA
CCCTGCGCCCAAGAGCCGTCCTCCCGTCTCCTCCCTGTCCGCTCTCTCTC
TCTCGTCTTGCGCCCCTGACTCCTACGTATCCCCCTGCTCCTCGGTTTCC
ACCGTCCTGCCTGCTTCGCCCATGTCCATTCTTTCCACCGAGTCGACCAC
CACGAGCAGGGGACTGGATTTCATCCCGGAAGCGCCTGTGCTGGTACGAC
AGAATGCCTACGTGGGAGGGAGGGCGCGATATGCAGCTGGGGAGAGGAGG
AAAGTGGCGAGACGGTGCCGTCAGACTGAATTCGGGGACGCCTTTGTCCA
ACTGACCCAGGACGATAAGAACGAGTGGTGCCATGTAGGAGACATTACGA
GCGAGAAAGAGGAGGACAACAAAGAGGAGGGCTCCAGGGCGAGCGATCTT
TAA
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protein sequence of rna7223

>rna7223-protein ID=rna7223-protein|Name=rna7223|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MEPQEPLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSM
PVIPEVERESEEDAAGRGRGGIYSGMAGDDGRRKPQMYQDGFLASSTSHT
INKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARE
RASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKEVTERE
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mRNA from alignment at CM002471.1:50450..51699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7223 ID=rna7223|Name=rna7223|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at CM002471.1:50450..51699+ (Nannochloropsis gaditana)
tacataccCGGAGTCAAGAAAAAACGACTCTCGCCTGCCCGCCCTGTCGA
ACTAATGACGGCTAATTTAGAATTGAAGCCGTACAGTGGAATATTTGCTT
GCTTGATAGCTTCAAAATGTGTGCCATGCGTTTGTCACGGGCTCTAAGCT
GCACGTAATACGCGTTCCCGCTCTCGTCGTCGCTTTCGCGTTTCTCGCCC
ATATCGACAGCACGTCAACTTGCCTTGCTCCTGGAGGCTGAACAAGAATG
GAGCCGCAAGAACCACTTCCAACGTCCTATGGTCAGGGCTACGCGCACAG
TGGGCAGCATACACAATACCCCTCTCCGgccttccctgctttccccaccg
ccgcAAGCACGAGTCGCCCGTACCCCTCAACAACCTTCTCATCGATGCCG
GTTATACCCGAGGTGGAGCgtgagagtgaggaggatgccgcaggacgagg
aagaggaggcataTACTCTGGGATGGCGGGCGACGATGGAAGGCGGAAAC
CACAAATGTATCAAGACGGGTGAGAACAAGAGGGCAGACCTTGCATGCGC
ACGTTGCTGCTAGCTgtcccgccttgccctttccATTTCTATACCTCGCC
CCGGCGACTCAACAGACGATCCTCACACTTGTCGATTCGTCATCGAACTT
ACACTCTCGACAGCTTTTTGGCGTCCAGTACCTCTCACACGATCAATAAA
CACGAGGTCAGCATAgcccagcagcagcggaGCCTCGCCGAGGAGACGGC
CATCCGGCgcagggagatggaggaagaaatccaGGTagacgaggggagga
agatgaatcTGGAGTCAGACGACAGGCAGGTGTCTGACTGGGCTGTACCA
TCTATCCACATTCATCGACGGGACAGGCGTTACACAAGCGCATTTACGCC
ATCGACGAGAAGGTTCGtacctctctcccgccccatTATTATCGCCCTag
gccctctcttcccctcctccttcccctgccgcTTCTCACTGTTGTCTTCC
TGCATATCCCTTCACATTCTACCCtcaccactccctcctctttccccggc
TGATCTGGCCTcggtcctcgccctcctttttctctgTTCGGAATGGCCGT
AGATCCAACGCACCGCGCGCGAACGAGCATCGACAGCCTCACGTCTTCAA
Cagaagatcggatcgagggtggaagggttgcagaaggagtgggaggggaa
ggtggaggagaactTCGACTGGATTTtgaaggaggtgacggagagAGAGA
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Coding sequence (CDS) from alignment at CM002471.1:50450..51699+

>rna7223 ID=rna7223|Name=rna7223|organism=Nannochloropsis gaditana|type=CDS|length=2308bp|location=Sequence derived from alignment at CM002471.1:50450..51699+ (Nannochloropsis gaditana)
ATGGAGCCGCAAGAACCACTTCCAACGTCCTATGGTCAGGGCTACGCGCA
CAGTGGGCAGCATACACAATACCCCTCTCCGgccttccctgctttcccca
ccgccgcAAGCACGAGTCGCCCGTACCCCTCAACAACCTTCTCATCGATG
CCGGTTATACCCGAGGTGGAGCgtgagagtgaggaggatgccgcaggacg
aggaagaggaggcataTACTCTGGGATGGCGGGCGACGATGGAAGGCGGA
AACCACAAATGTATCAAGACGGCTTTTTGGCGTCCAGTACCTCTCACACG
ATCAATAAACACGAGGTCAGCATAgcccagcagcagcggaGCCTCGCCGA
GGAGACGGCCATCCGGCgcagggagatggaggaagaaatccaGGCGTTAC
ACAAGCGCATTTACGCCATCGACGAGAAGATCCAACGCACCGCGCGCGAA
CGAGCATCGACAGCCTCACGTCTTCAACagaagatcggatcgagggtgga
agggttgcagaaggagtgggaggggaaggtggaggagaactTCGACTGGA
TTTtgaaggaggtgacggagagAGAGAATGGAGCCGCAAGAACCACTTCC
AACGTCCTATGGTCAGGGCTACGCGCACAGTGGGCAGCATACACAATACC
CCTCTCCGgccttccctgctttccccaccgccgcAAGCACGAGTCGCCCG
TACCCCTCAACAACCTTCTCATCGATGCCGGTTATACCCGAGGTGGAGCg
tgagagtgaggaggatgccgcaggacgaggaagaggaggcataTACTCTG
GGATGGCGGGCGACGATGGAAGGCGGAAACCACAAATGTATCAAGACGGC
TTTTTGGCGTCCAGTACCTCTCACACGATCAATAAACACGAGGTCAGCAT
AgcccagcagcagcggaGCCTCGCCGAGGAGACGGCCATCCGGCgcaggg
agatggaggaagaaatccaGGCGTTACACAAGCGCATTTACGCCATCGAC
GAGAAGATCCAACGCACCGCGCGCGAACGAGCATCGACAGCCTCACGTCT
TCAACagaagatcggatcgagggtggaagggttgcagaaggagtgggagg
ggaaggtggaggagaactTCGACTGGATTTtgaaggaggtgacggagagA
GAGAATGGAGCCGCAAGAACCACTTCCAACGTCCTATGGTCAGGGCTACG
CGCACAGTGGGCAGCATACACAATACCCCTCTCCGgccttccctgctttc
cccaccgccgcAAGCACGAGTCGCCCGTACCCCTCAACAACCTTCTCATC
GATGCCGGTTATACCCGAGGTGGAGCgtgagagtgaggaggatgccgcag
gacgaggaagaggaggcataTACTCTGGGATGGCGGGCGACGATGGAAGG
CGGAAACCACAAATGTATCAAGACGGCTTTTTGGCGTCCAGTACCTCTCA
CACGATCAATAAACACGAGGTCAGCATAgcccagcagcagcggaGCCTCG
CCGAGGAGACGGCCATCCGGCgcagggagatggaggaagaaatccaGGCG
TTACACAAGCGCATTTACGCCATCGACGAGAAGATCCAACGCACCGCGCG
CGAACGAGCATCGACAGCCTCACGTCTTCAACagaagatcggatcgaggg
tggaagggttgcagaaggagtgggaggggaaggtggaggagaactTCGAC
TGGATTTtgaaggaggtgacggagagAGAGAATGGAGCCGCAAGAACCAC
TTCCAACGTCCTATGGTCAGGGCTACGCGCACAGTGGGCAGCATACACAA
TACCCCTCTCCGgccttccctgctttccccaccgccgcAAGCACGAGTCG
CCCGTACCCCTCAACAACCTTCTCATCGATGCCGGTTATACCCGAGGTGG
AGCgtgagagtgaggaggatgccgcaggacgaggaagaggaggcataTAC
TCTGGGATGGCGGGCGACGATGGAAGGCGGAAACCACAAATGTATCAAGA
CGGCTTTTTGGCGTCCAGTACCTCTCACACGATCAATAAACACGAGGTCA
GCATAgcccagcagcagcggaGCCTCGCCGAGGAGACGGCCATCCGGCgc
agggagatggaggaagaaatccaGGCGTTACACAAGCGCATTTACGCCAT
CGACGAGAAGATCCAACGCACCGCGCGCGAACGAGCATCGACAGCCTCAC
GTCTTCAACagaagatcggatcgagggtggaagggttgcagaaggagtgg
gaggggaaggtggaggagaactTCGACTGGATTTtgaaggaggtgacgga
gagAGAGA
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Synonyms
Publications