EWM23467.1, cds7206 (CDS) Nannochloropsis gaditana

Overview
NameEWM23467.1
Unique Namecds7206
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:50697..50968 +
Alignment locationCM002471.1:51113..51233 +
Alignment locationCM002471.1:51326..51361 +
Alignment locationCM002471.1:51552..51699 +

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Properties
Property NameValue
End range.
End range51699
Protein idEWM23467.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100651g1.737.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:50697..50968 +
CM002471.1supercontigCM002471.1:51113..51233 +
CM002471.1supercontigCM002471.1:51326..51361 +
CM002471.1supercontigCM002471.1:51552..51699 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0046417chorismate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002701Chorismate_mutase
Homology
[Close]
BLAST of EWM23467.1 vs. NCBI_GenBank
Match: gi|585104529|gb|EWM23467.1| (hypothetical protein Naga_100651g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 392.889 bits (1008), Expect = 2.393e-138
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 
Query:    1 MEPQEPLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVERESEEDAAGRGRGGIYSGMAGDDGRRKPQMYQDGFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKEVTERE 192
            MEPQEPLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVERESEEDAAGRGRGGIYSGMAGDDGRRKPQMYQDGFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKEVTERE
Sbjct:    1 MEPQEPLPTSYGQGYAHSGQHTQYPSPAFPAFPTAASTSRPYPSTTFSSMPVIPEVERESEEDAAGRGRGGIYSGMAGDDGRRKPQMYQDGFLASSTSHTINKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKEVTERE 192
[Close]
BLAST of EWM23467.1 vs. NCBI_GenBank
Match: gi|553188261|ref|XP_005854763.1| (hypothetical protein NGA_0380200, partial [Nannochloropsis gaditana CCMP526] >gi|422294298|gb|EKU21598.1| hypothetical protein NGA_0380200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 125.946 bits (315), Expect = 1.437e-34
Identity = 68/86 (79.07%), Postives = 69/86 (80.23%), Query Frame = 0 
Query:  102 NKHEVSIAQQQRSLAEETAIRRREMEEEIQALHKRIYAIDEKIQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE 187
            N   +  AQQQRSLAEETAIRRREMEEEIQ            IQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE
Sbjct:    5 NHKCIKTAQQQRSLAEETAIRRREMEEEIQ------------IQRTARERASTASRLQQKIGSRVEGLQKEWEGKVEENFDWILKE 78
The following BLAST results are available for this feature:
BLAST of EWM23467.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104529|gb|EWM23467.1|2.393e-138100.00hypothetical protein Naga_100651g1, partial [Nanno... [more]
gi|553188261|ref|XP_005854763.1|1.437e-3479.07hypothetical protein NGA_0380200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7223rna7223Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications