EWM23494.1, cds7187 (CDS) Nannochloropsis gaditana

Overview
NameEWM23494.1
Unique Namecds7187
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:703174..703537 -
Alignment locationCM002470.1:702942..703054 -
Alignment locationCM002470.1:702763..702873 -
Alignment locationCM002470.1:702609..702680 -
Alignment locationCM002470.1:702428..702490 -
Alignment locationCM002470.1:702280..702361 -
Alignment locationCM002470.1:702075..702205 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23494.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100198g11.5736.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:703174..703537 -
CM002470.1supercontigCM002470.1:702942..703054 -
CM002470.1supercontigCM002470.1:702763..702873 -
CM002470.1supercontigCM002470.1:702609..702680 -
CM002470.1supercontigCM002470.1:702428..702490 -
CM002470.1supercontigCM002470.1:702280..702361 -
CM002470.1supercontigCM002470.1:702075..702205 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|585104564|gb|EWM23494.1| (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MSSFRVRLKRLLLKNSTYFSHAILRATKLDPFIVLIPCFIVEVISNVSLWFFRSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFRMNQ 311
            MSSFRVRLKRLLLKNSTYFSHAILRATKLDPFIVLIPCFIVEVISNVSLWFFRSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFRMNQ
Sbjct:    1 MSSFRVRLKRLLLKNSTYFSHAILRATKLDPFIVLIPCFIVEVISNVSLWFFRSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFRMNQ 311          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|553185360|ref|XP_005854240.1| (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >gi|422294820|gb|EKU22120.1| hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 339.732 bits (870), Expect = 1.149e-115
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:   55 MATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHAL 220
            MATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHAL
Sbjct:    1 MATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHAL 166          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|585107197|gb|EWM25436.1| (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 157.918 bits (398), Expect = 4.552e-42
Identity = 80/199 (40.20%), Postives = 127/199 (63.82%), Query Frame = 0
Query:  110 ERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308
            +R   ++ +  G   P+    K AF QK+ K  +D +ELF    KSKAF+++L+NVEIQHRI++ +P+L A  GFR+  GRRL+ +ET  GF+ GV+N+++  K +     +P      IA+++   +P IQ LF+ A E D A+V EL+++     +PGVD+ +L++V  + TF+KLL +PE+ RFID++ + S  FR
Sbjct:  101 KRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFR 299          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|553183764|ref|XP_005853961.1| (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >gi|422295096|gb|EKU22395.1| hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.457 bits (267), Expect = 1.053e-23
Identity = 63/181 (34.81%), Postives = 101/181 (55.80%), Query Frame = 0
Query:  125 PVGSP-GKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYIS 304
            P   P G+    Q   K+G+D ++LFET F S   ++IL++VE QH+I+E +P+L A  GF+E  GRRL D  TTAGF+ G+ ++L+      K   +P++    ++EL   D   I + F  AS  D  ++  +     + LYPGV+ ++L+ V  S    K+    E+ R I+ DP ++
Sbjct:   49 PAYKPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVT 229          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|585102650|gb|EWM22205.1| (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 104.375 bits (259), Expect = 1.296e-22
Identity = 55/179 (30.73%), Postives = 105/179 (58.66%), Query Frame = 0
Query:  131 KSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQETTAGFSKGVRNLLEMFKTSAKHALN-PTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVF 307
            ++ +   + K+  + V++F+    +K F++IL+N +IQHR+++  P+LGA++GF   +  RRL+ +ET   FS G+  LL +   +  + +N P  ++  +A+++ S DP IQ+LFK A   ++ +V EL++      Y G+D +  +++      DK   +PEM  FI +D  +++ F
Sbjct:   74 RAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAF 252          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|585105441|gb|EWM24107.1| (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 106.301 bits (264), Expect = 2.018e-22
Identity = 60/171 (35.09%), Postives = 97/171 (56.73%), Query Frame = 0
Query:  134 FFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYIS 304
              Q   K+G+D ++LFET F S   ++IL++VE QH+I+E +P+L A  GF+E  GRRL D  TTAGF+ G+ ++L+      K   +P++    ++EL   D   I + F  AS  D  ++  +     + LYPGV+ ++L+ V  S    K+    E+ R I+ DP ++
Sbjct:   59 MMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVT 229          
BLAST of EWM23494.1 vs. NCBI_GenBank
Match: gi|553185077|ref|XP_005854196.1| (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >gi|422294860|gb|EKU22160.1| hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.3521 bits (220), Expect = 7.244e-17
Identity = 55/209 (26.32%), Postives = 105/209 (50.24%), Query Frame = 0
Query:  131 KSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQE------------------------------TTAGFSKGVRNLLEMFKTSAKHALN-PTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVF 307
            ++ +   + K+  + V++F+    +K F++IL+N +IQHR+++  P+LGA++GF   +  RRL+ +E                              T   FS G+  LL +   +  + +N P  ++  +A+++ S DP IQ+LFK A   ++ +V EL++      Y G+D +  +++      DK   +PEM  FI +D  +++ F
Sbjct:   74 RAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAKAF 282          
The following BLAST results are available for this feature:
BLAST of EWM23494.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585104564|gb|EWM23494.1|0.000e+0100.00hypothetical protein Naga_100198g11 [Nannochlorops... [more]
gi|553185360|ref|XP_005854240.1|1.149e-115100.00hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
gi|585107197|gb|EWM25436.1|4.552e-4240.20hypothetical protein Naga_100005g87 [Nannochlorops... [more]
gi|553183764|ref|XP_005853961.1|1.053e-2334.81hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
gi|585102650|gb|EWM22205.1|1.296e-2230.73hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
gi|585105441|gb|EWM24107.1|2.018e-2235.09hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
gi|553185077|ref|XP_005854196.1|7.244e-1726.32hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7204rna7204Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications