EWM23523.1, cds7150 (CDS) Nannochloropsis gaditana

Overview
NameEWM23523.1
Unique Namecds7150
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:603491..603698 +
Alignment locationCM002470.1:603966..604072 +
Alignment locationCM002470.1:604225..604305 +

Link to JBrowse

Properties
Property NameValue
End range.
End range604305
Protein idEWM23523.1
Productdihydroxyhept-2-ene- -dioic acid aldolase
Partialtrue
Orig transcript idgnl|cribi|Naga_101448g1.5511.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:603491..603698 +
CM002470.1supercontigCM002470.1:603966..604072 +
CM002470.1supercontigCM002470.1:604225..604305 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015813Pyrv/PenolPyrv_Kinase-like_dom
IPR005000Aldolase/citrate-lyase_domain
Homology
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|585104621|gb|EWM23523.1| (dihydroxyhept-2-ene- -dioic acid aldolase, partial [Nannochloropsis gaditana])

HSP 1 Score: 273.092 bits (697), Expect = 6.787e-93
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MAAHRLTNKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRGAFA 132
            MAAHRLTNKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRGAFA
Sbjct:    1 MAAHRLTNKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRGAFA 132          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|517520162|ref|WP_018690370.1| (hypothetical protein [Ahrensia kielensis])

HSP 1 Score: 143.665 bits (361), Expect = 4.993e-40
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRG 129
            NK+ +++   +PA+ AW+ IGS Y AE +ARQGFD+  +D QHGM+   T + MF AI+T   V PLARV CN   +I  +LDAGA G+ICP+I+T ++ R F +AC+YP QG RS+GP RG
Sbjct:    4 NKLKEIFAEGRPAINAWLSIGSSYAAEGVARQGFDSVTIDFQHGMIGFDTGLTMFQAISTTDAV-PLARVSCNDAAQIMHILDAGAYGIICPMISTEEDARSFASACKYPSQGSRSFGPSRG 124          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|651368413|ref|WP_026480707.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Ahrensia sp. 13_GOM-1096m])

HSP 1 Score: 143.665 bits (361), Expect = 5.214e-40
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRG 129
            NK+ +++   +PA+ AW+ IGS Y AE +ARQGFD+  +D QHGM+   T + MF AI+T   V PLARV CN   +I  +LDAGA G+ICP+I+T ++ R F +AC+YP QG RS+GP RG
Sbjct:    4 NKLKEIFAEGRPAINAWLSIGSSYAAEGVARQGFDSVTIDFQHGMIGFDTGLTMFQAISTTDAV-PLARVSCNDAAQIMHILDAGAYGIICPMISTEEDARSFASACKYPSQGSRSFGPSRG 124          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|852086342|ref|WP_048278410.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|846703471|gb|KMK15438.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|846713684|gb|KMK25338.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|846724513|gb|KMK35812.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae])

HSP 1 Score: 136.346 bits (342), Expect = 3.116e-37
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRG 129
            N+V       +P V  W+ I S Y+AE +  QGFDA  VDLQHGM+D  + + M  A++  P V PL RV+ N P +I  +LDAGA G+ICP+I+TA E R FVAACRY PQG RS+GP RG
Sbjct:    4 NQVKAALAENRPVVNGWLAIPSGYSAEIVGHQGFDAVTVDLQHGMIDFASALTMLQALSATPAV-PLVRVQNNNPAQIMRMLDAGAYGIICPMISTADEARAFVAACRYSPQGNRSFGPARG 124          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|772691831|ref|WP_045289740.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|771086793|gb|KJM61087.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|1199062837|gb|OUR02751.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae])

HSP 1 Score: 135.961 bits (341), Expect = 4.747e-37
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRG 129
            N+V       +P V  W+ I S Y+AE +  QGFDA  VDLQHGM+D  + + M  A++  P V PL RV+ N P +I  +LDAGA G+ICP+I+TA E R F+AACRY PQG RS+GP RG
Sbjct:    4 NQVKAALAENRPVVNGWLAIPSGYSAEIVGHQGFDAVTVDLQHGMIDFASALTMLQALSATPAV-PLVRVQNNNPAQIMRMLDAGAYGIICPMISTADEARAFIAACRYSPQGNRSFGPARG 124          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|852098973|ref|WP_048282860.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae] >gi|846706292|gb|KMK18188.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Pluralibacter gergoviae])

HSP 1 Score: 135.576 bits (340), Expect = 6.151e-37
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRG 129
            N+V       +P V  W+ I S Y+AE +  QGFDA  VDLQHGM+D  + + M  A++  P V PL RV+ N P +I  +LDAGA G+ICP+I+TA E R FVAACRY PQG RS+GP RG
Sbjct:    4 NQVKAALAENRPVVNGWLAIPSGYSAEIVGHQGFDAVTVDLQHGMIDFASALAMLQALSATPTV-PLVRVQNNNPAQIMRMLDAGAYGIICPMISTADEARAFVAACRYSPQGNRSFGPARG 124          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|640699605|ref|WP_025123572.1| (MULTISPECIES: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Serratia])

HSP 1 Score: 134.806 bits (338), Expect = 1.254e-36
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGR 128
            N++ + ++ + P V  W+ I S Y+AE    QG+DA  VD+QHGM+D    + M  A+++ P V P+ARV CN P +I  LLDAGA G+ICP+I++A++ R FV+ACRYPP G RS+GP R
Sbjct:    4 NRLKEAFRQQLPVVNGWLAIPSGYSAEIAGHQGYDAVTVDMQHGMIDFSNALSMLQALSSTPAV-PIARVACNDPAQIMRLLDAGAWGIICPMISSAEQARQFVSACRYPPLGTRSFGPAR 123          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|738854084|ref|WP_036743164.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Paracoccus halophilus] >gi|694204952|gb|KGJ02836.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Paracoccus halophilus] >gi|1097684781|emb|SFA60238.1| 4-hydroxy-2-oxoheptanedioate aldolase [Paracoccus halophilus])

HSP 1 Score: 134.42 bits (337), Expect = 1.889e-36
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRGAFA 132
            NK+  +W   KPA+  W+ IGSP+TAE +A QG+D+  +D+QHG +D G+++ M  A+    GVTP+ARV   +P  I   LDAGA G+ICP+IN+A+E  +FV+  RYPP G+RS+GP R A A
Sbjct:    4 NKLRQIWAEGKPALNGWLSIGSPFTAEIMAAQGYDSVSIDIQHGALDYGSLLPMLQAM-RASGVTPMARVPWREPGIIMKALDAGAQGIICPMINSAEEAAEFVSYMRYPPHGQRSFGPTRAAIA 127          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|736473203|ref|WP_034494872.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Buttiauxella agrestis] >gi|668965034|gb|KFC82441.1| 2-dehydro-3-deoxyglucarate aldolase [Buttiauxella agrestis ATCC 33320])

HSP 1 Score: 134.42 bits (337), Expect = 2.151e-36
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 0
Query:    8 NKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGR 128
            N +   ++ ++P +  W+ I S Y+AE +  QG+D+  VD+QHGM+D    + M  AI+  P  TPLARV  N+P +I  LLDAGA G+ICP+I+TA++ R FV+ACRYPP G RS+GP R
Sbjct:    4 NPLKAAFRQQQPIINGWLAIPSGYSAEIVGHQGYDSVTVDMQHGMIDFANALSMLQAISATP-ATPLARVNTNEPAQIMRLLDAGAWGIICPMISTAEQARQFVSACRYPPLGNRSFGPAR 123          
BLAST of EWM23523.1 vs. NCBI_GenBank
Match: gi|750686975|ref|WP_040961856.1| (2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Sinorhizobium fredii])

HSP 1 Score: 133.265 bits (334), Expect = 5.418e-36
Identity = 60/127 (47.24%), Postives = 89/127 (70.08%), Query Frame = 0
Query:    6 LTNKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQHGMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPLINTAQEVRDFVAACRYPPQGRRSYGPGRGAFA 132
            L NK+  +W   +P++  W+ IG+ +TAE +A QG+D+  +D+QHG +D G+V+ MF A+    GV P+ARV   +P  I  +LDAGA GVICP++NTA++  +FV+  RYPP G+RS+GP R +FA
Sbjct:    2 LKNKLKQIWAEGRPSINGWLSIGNAFTAEIMAAQGYDSVSIDVQHGALDYGSVLPMFQAM-RASGVVPMARVPWLEPGIIMKVLDAGAYGVICPMVNTAEQAAEFVSYMRYPPHGQRSFGPTRVSFA 127          
The following BLAST results are available for this feature:
BLAST of EWM23523.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104621|gb|EWM23523.1|6.787e-93100.00dihydroxyhept-2-ene- -dioic acid aldolase, partial... [more]
gi|517520162|ref|WP_018690370.1|4.993e-4051.64hypothetical protein [Ahrensia kielensis][more]
gi|651368413|ref|WP_026480707.1|5.214e-4051.642,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [A... [more]
gi|852086342|ref|WP_048278410.1|3.116e-3752.462,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [P... [more]
gi|772691831|ref|WP_045289740.1|4.747e-3751.642,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [P... [more]
gi|852098973|ref|WP_048282860.1|6.151e-3752.462,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [P... [more]
gi|640699605|ref|WP_025123572.1|1.254e-3648.76MULTISPECIES: 2,4-dihydroxyhept-2-ene-1,7-dioic ac... [more]
gi|738854084|ref|WP_036743164.1|1.889e-3649.602,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [P... [more]
gi|736473203|ref|WP_034494872.1|2.151e-3648.762,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [B... [more]
gi|750686975|ref|WP_040961856.1|5.418e-3647.242,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7167rna7167Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications