rna7167, rna7167 (mRNA) Nannochloropsis gaditana

Overview
Namerna7167
Unique Namerna7167
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length225
Alignment locationCM002470.1:603292..604305 +

Link to JBrowse

Properties
Property NameValue
Productdihydroxyhept-2-ene- -dioic acid aldolase
Orig transcript idgnl|cribi|Naga_101448g1.5511.mrna
Orig protein idgnl|cribi|Naga_101448g1.5511
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:603292..604305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101448g1gene6929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7167rna7167-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23523.1cds7150Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7167 ID=rna7167|Name=rna7167|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGCTCCTCGCCGCCCACGGCTTCGCCTTCGATGTGGCCTACACTTCCGT
CCTCAAACGCTCCATCAAGAGCCTCTGGTTCTGCCTCGATGGCTGTGATC
ACACCTTCATCCCCGTTAAAATGCACTGGCGCTTGAACGAGCGACACTAT
GGGTCTGTCCAAAGTCGAGTCCGAAAAAAAATTGGGGCCGATAGTGAGGG
AGTGGCGGCGATCGTGGCGAGGTAG
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protein sequence of rna7167

>rna7167-protein ID=rna7167-protein|Name=rna7167|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MAAHRLTNKVLDLWKARKPAVTAWMGIGSPYTAEALARQGFDACVVDLQH
GMVDEGTVIQMFAAIATVPGVTPLARVRCNQPDKIHFLLDAGALGVICPL
INTAQEVRDFVAACRYPPQGRRSYGPGRGAFA
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mRNA from alignment at CM002470.1:603292..604305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7167 ID=rna7167|Name=rna7167|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp|location=Sequence derived from alignment at CM002470.1:603292..604305+ (Nannochloropsis gaditana)
AAAGCAAGTTGCTTGTCCGGGGTCTTGGCTTGCAGTGGTTGATGCGACAG
GCAGATATTGCTATGTTTGGCCTGAAAAGCGTGCGGGTGACTTGGTTCTT
GCGCCTattgctccctcccaggccgtAGTCCGACgtacccccttcctccc
ttcttgcctaccgtccccctccttccccctccttcccccctaaGACTCCA
TGGCCGCTCACCGCCTCACCAACAAAGTTCTCGACCTGTGGAAGGCAAGA
AAACCAGCCGTCACTGCCTGGATGGGCATTGGGTCGCCCTACACGGCCGA
GGCGTTGGCACGGCAAGGTTTCGACGCCTGTGTCGTGGACTTGCAGCATG
GGATGGTGGACGAGGGTACGGTTATCCAAATGttcgccgccatcgccacg
GTGCCAGGTGAGGGCATGGCCGAGCGTCGCTTTCGGAAGGTCCGGCTCCC
GTCGTGCGggcctacctcccttcctcttctctcccttttatctacctccc
ttcctctcccctcccttccatctacctcccttcctctcccctcccttcca
tctacctcccttcctcacccctccctttcatctacctcccttcctgctcc
cctctgcctttccaaccttctccccccgcccatgCACGAtgcccgtcccc
tcctctttccgtcctcccccttagGTGTCACCCCTTTGGCCCGCGTCCGC
TGCAATCAACCCGACAAAATCCACTTTTTATTGGATGCCGGGGCTTTGGG
CGTCATCTGTCCCCTCATCAACACCGCTCAGGTctcatggaggaggcgaa
cttccccctccctccttttcggttccctcccttgctctttcctgtcctct
ttcccacttttcctccctccctccctcggctaCACCGcattcacctcctc
cctccctcctccctcccatctcaTCACCCGCAGGAGGTTCGGGACTTCGT
AGCCGCCTGTAGGTACCCCCCGCAGGGGCGACGAAGCTATGGGCCGGGCC
GAGGGGCGTTCGCA
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Coding sequence (CDS) from alignment at CM002470.1:603292..604305+

>rna7167 ID=rna7167|Name=rna7167|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at CM002470.1:603292..604305+ (Nannochloropsis gaditana)
ATGGCCGCTCACCGCCTCACCAACAAAGTTCTCGACCTGTGGAAGGCAAG
AAAACCAGCCGTCACTGCCTGGATGGGCATTGGGTCGCCCTACACGGCCG
AGGCGTTGGCACGGCAAGGTTTCGACGCCTGTGTCGTGGACTTGCAGCAT
GGGATGGTGGACGAGGGTACGGTTATCCAAATGttcgccgccatcgccac
gGTGCCAGGTGTCACCCCTTTGGCCCGCGTCCGCTGCAATCAACCCGACA
AAATCCACTTTTTATTGGATGCCGGGGCTTTGGGCGTCATCTGTCCCCTC
ATCAACACCGCTCAGGAGGTTCGGGACTTCGTAGCCGCCTGTAGGTACCC
CCCGCAGGGGCGACGAAGCTATGGGCCGGGCCGAGGGGCGTTCGCAATGG
CCGCTCACCGCCTCACCAACAAAGTTCTCGACCTGTGGAAGGCAAGAAAA
CCAGCCGTCACTGCCTGGATGGGCATTGGGTCGCCCTACACGGCCGAGGC
GTTGGCACGGCAAGGTTTCGACGCCTGTGTCGTGGACTTGCAGCATGGGA
TGGTGGACGAGGGTACGGTTATCCAAATGttcgccgccatcgccacgGTG
CCAGGTGTCACCCCTTTGGCCCGCGTCCGCTGCAATCAACCCGACAAAAT
CCACTTTTTATTGGATGCCGGGGCTTTGGGCGTCATCTGTCCCCTCATCA
ACACCGCTCAGGAGGTTCGGGACTTCGTAGCCGCCTGTAGGTACCCCCCG
CAGGGGCGACGAAGCTATGGGCCGGGCCGAGGGGCGTTCGCAATGGCCGC
TCACCGCCTCACCAACAAAGTTCTCGACCTGTGGAAGGCAAGAAAACCAG
CCGTCACTGCCTGGATGGGCATTGGGTCGCCCTACACGGCCGAGGCGTTG
GCACGGCAAGGTTTCGACGCCTGTGTCGTGGACTTGCAGCATGGGATGGT
GGACGAGGGTACGGTTATCCAAATGttcgccgccatcgccacgGTGCCAG
GTGTCACCCCTTTGGCCCGCGTCCGCTGCAATCAACCCGACAAAATCCAC
TTTTTATTGGATGCCGGGGCTTTGGGCGTCATCTGTCCCCTCATCAACAC
CGCTCAGGAGGTTCGGGACTTCGTAGCCGCCTGTAGGTACCCCCCGCAGG
GGCGACGAAGCTATGGGCCGGGCCGAGGGGCGTTCGCA
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Synonyms
Publications