rna7160, rna7160 (mRNA) Nannochloropsis gaditana

Overview
Namerna7160
Unique Namerna7160
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length617
Alignment locationCM002470.1:589498..590446 -

Link to JBrowse

Properties
Property NameValue
Productadenylosuccinate synthetase
Orig transcript idgnl|cribi|Naga_100934g1.4299.mrna
Orig protein idgnl|cribi|Naga_100934g1.4299
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:589498..590446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100934g1gene6922Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7160rna7160-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23530.1cds7143Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7160 ID=rna7160|Name=rna7160|organism=Nannochloropsis gaditana|type=mRNA|length=617bp
TCCCTCCGGCCTTTCTCCCTCCCTTTCCTCCCTTCTCTTGTTTCTCTCTT
CCTTTCTGTCTCCAGTGGAGATTTCCTTATACTTTCTGTCTTGTCACCGG
CTTGTCTCCTCGCGGTCTTTCCTCCCTGTCTGGCCAGACCCTCCCACCCC
CCTCTACCGTCACACAATGCTCTCTCTTTTTTTAATATAAGAAATGGAGG
ATTTTTCTCCCTTCCTCGTGCCATTTCGCCTCTTCACTTTCTCTTTTCCC
AATCGACTTTTCTCTCTTTCCCCCTCTCCTTCCTCTTCCCCTCTCTCTGT
CCCTTCCTCTGTCCCTTCCTCTGTCCCTTCCTCTGTCCCTTCCTCTTTTT
AGGTCTCCTCTATTGAAGCGCGGTACCCTCGTCTCAAGATCGACGTGGAG
GAACAGCTTGCCTACTATCGTGACATTCGGCCCTCCCTGCTCCCGCTCAT
CCGCGACACGATCGAATTCACGAACGCCGCTTTTGACAGCGGGAAAAAGG
TTTTGGTGGAAGGCGCGAACGCCACCATGCTCGACATCGATTTCGGAACC
TATCCTTACGTGACCTCCTCCAACCCCAGGTGGGAGGGAGGGAGGGAGGG
AGGGAGCGAGGGAGGGA
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protein sequence of rna7160

>rna7160-protein ID=rna7160-protein|Name=rna7160|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MYHGLSLSFLLSGEKSHISVSTIVHLLLTETLSSPSLPFFSFLSPFLFSS
LLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPA
PSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGGLQCRPHHLRRWK
EIQATAWSSTSRS
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mRNA from alignment at CM002470.1:589498..590446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7160 ID=rna7160|Name=rna7160|organism=Nannochloropsis gaditana|type=mRNA|length=949bp|location=Sequence derived from alignment at CM002470.1:589498..590446- (Nannochloropsis gaditana)
ATGTATCATGGACTTTCACTTTCATTTCTCTTAAGTGGCGAGAAAAGTCA
TATTTCGGTCTCAACTATCGTGCATCTCCTCCTCACAGAGACTCTCAGCT
CTCCCTCCCTCCCTTTCTTCTCCTTCCTCTCTCCTTTCCTCTTCTCTTCC
CTGCTCTTTCTCTCACCCAGCTACATGGGCGGGAGCACGCTTCCCGCCGA
ACAGTCCCCTGCCCATGTGGACATGAAGAAGGAGGAGGAAGTGAACCAGT
TATTGAATAAAATTCGACGGGTGGAAAGCCAAAGCCGGCGGGTGCCAGCT
CCCAGCCCCTCAGTGGACGTGGTGTTGGGAAGTCAATGGGGAGATGAGGG
AAAAGGGAAGCTGGGTAAGAGCGCAAGAAAGAGGAGGAGGACGGGAGAAT
AGGAGGGCAAGAAGCAGAGAGGGATGCGAGTGATGTCTCGTGTTAAGCTC
CAGATTTTTTTTCCTTTCTTTGGACCCGTCACCTTCCCCTCGCTCCCTCC
CTCGCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTCAGTGGACATTCTGTCCGCCCAATACGACGTGGTCG
CCCGCGTTGCGGGGGGGCTCCAATGCCGGCCACACCATCTACGTAGATGG
AAGGAAATACAAGTTCCACTTGGTGCCTTCTGGCATTTTGAACCCCAAGG
CAGTCTGTGTGATAGGCAACGGCGTGGTAGGTCCCCATCCCTCCCTCCCT
CCCTCCCTCCTTCCCTCCCTCCCTCCTTTGTCTTTTGGTTCATGCTGCAC
TTCTTTCCTGTGCTTCCTCCTTTCTTTCCGCATGACCATCGCCTAAAAAC
TGGGAGATCCATGTTGGCGCACGCCTTTCCTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCTTCCTCCTTCCCGCAGGTCGTCCACATCCCGCAGCTGA
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Coding sequence (CDS) from alignment at CM002470.1:589498..590446-

>rna7160 ID=rna7160|Name=rna7160|organism=Nannochloropsis gaditana|type=CDS|length=1968bp|location=Sequence derived from alignment at CM002470.1:589498..590446- (Nannochloropsis gaditana)
GTCGTCCACATCCCGCAGCTGAGCAACGGCGTGTGGACATTCTGTCCGCC
CAATACGACGTGGTCGCCCGCGTTGCGGGGGGGCTCCAATGCCGGCCACA
CCATCTACGTAGATGGAAGGAAATACAAATGTATCATGGACTTTCACTTT
CATTTCTCTTAAGTGGCGAGAAAAGTCATATTTCGGTCTCAACTATCGTG
CATCTCCTCCTCACAGAGACTCTCAGCTCTCCCTCCCTCCCTTTCTTCTC
CTTCCTCTCTCCTTTCCTCTTCTCTTCCCTGCTCTTTCTCTCACCCAGCT
ACATGGGCGGGAGCACGCTTCCCGCCGAACAGTCCCCTGCCCATGTGGAC
ATGAAGAAGGAGGAGGAAGTGAACCAGTTATTGAATAAAATTCGACGGGT
GGAAAGCCAAAGCCGGCGGGTGCCAGCTCCCAGCCCCTCAGTGGACGTGG
TGTTGGGAAGTCAATGGGGAGATGAGGGAAAAGGGAAGCTGGGTCGTCCA
CATCCCGCAGCTGAGCAACGGCGTGTGGACATTCTGTCCGCCCAATACGA
CGTGGTCGCCCGCGTTGCGGGGGGGCTCCAATGCCGGCCACACCATCTAC
GTAGATGGAAGGAAATACAAATGTATCATGGACTTTCACTTTCATTTCTC
TTAAGTGGCGAGAAAAGTCATATTTCGGTCTCAACTATCGTGCATCTCCT
CCTCACAGAGACTCTCAGCTCTCCCTCCCTCCCTTTCTTCTCCTTCCTCT
CTCCTTTCCTCTTCTCTTCCCTGCTCTTTCTCTCACCCAGCTACATGGGC
GGGAGCACGCTTCCCGCCGAACAGTCCCCTGCCCATGTGGACATGAAGAA
GGAGGAGGAAGTGAACCAGTTATTGAATAAAATTCGACGGGTGGAAAGCC
AAAGCCGGCGGGTGCCAGCTCCCAGCCCCTCAGTGGACGTGGTGTTGGGA
AGTCAATGGGGAGATGAGGGAAAAGGGAAGCTGGGTCGTCCACATCCCGC
AGCTGAGCAACGGCGTGTGGACATTCTGTCCGCCCAATACGACGTGGTCG
CCCGCGTTGCGGGGGGGCTCCAATGCCGGCCACACCATCTACGTAGATGG
AAGGAAATACAAATGTATCATGGACTTTCACTTTCATTTCTCTTAAGTGG
CGAGAAAAGTCATATTTCGGTCTCAACTATCGTGCATCTCCTCCTCACAG
AGACTCTCAGCTCTCCCTCCCTCCCTTTCTTCTCCTTCCTCTCTCCTTTC
CTCTTCTCTTCCCTGCTCTTTCTCTCACCCAGCTACATGGGCGGGAGCAC
GCTTCCCGCCGAACAGTCCCCTGCCCATGTGGACATGAAGAAGGAGGAGG
AAGTGAACCAGTTATTGAATAAAATTCGACGGGTGGAAAGCCAAAGCCGG
CGGGTGCCAGCTCCCAGCCCCTCAGTGGACGTGGTGTTGGGAAGTCAATG
GGGAGATGAGGGAAAAGGGAAGCTGGGTCGTCCACATCCCGCAGCTGAGC
AACGGCGTGTGGACATTCTGTCCGCCCAATACGACGTGGTCGCCCGCGTT
GCGGGGGGGCTCCAATGCCGGCCACACCATCTACGTAGATGGAAGGAAAT
ACAAATGTATCATGGACTTTCACTTTCATTTCTCTTAAGTGGCGAGAAAA
GTCATATTTCGGTCTCAACTATCGTGCATCTCCTCCTCACAGAGACTCTC
AGCTCTCCCTCCCTCCCTTTCTTCTCCTTCCTCTCTCCTTTCCTCTTCTC
TTCCCTGCTCTTTCTCTCACCCAGCTACATGGGCGGGAGCACGCTTCCCG
CCGAACAGTCCCCTGCCCATGTGGACATGAAGAAGGAGGAGGAAGTGAAC
CAGTTATTGAATAAAATTCGACGGGTGGAAAGCCAAAGCCGGCGGGTGCC
AGCTCCCAGCCCCTCAGTGGACGTGGTGTTGGGAAGTCAATGGGGAGATG
AGGGAAAAGGGAAGCTGG
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Synonyms
Publications