EWM23530.1, cds7143 (CDS) Nannochloropsis gaditana

Overview
NameEWM23530.1
Unique Namecds7143
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:590083..590446 -
Alignment locationCM002470.1:589785..589879 -
Alignment locationCM002470.1:589721..589731 -
Alignment locationCM002470.1:589498..589519 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23530.1
Productadenylosuccinate synthetase
Orig transcript idgnl|cribi|Naga_100934g1.4299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:590083..590446 -
CM002470.1supercontigCM002470.1:589785..589879 -
CM002470.1supercontigCM002470.1:589721..589731 -
CM002470.1supercontigCM002470.1:589498..589519 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006164purine nucleotide biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005525GTP binding
GO:0004019adenylosuccinate synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR018220Adenylosuccinate_synthase_AS
IPR001114Adenylosuccinate_synthetase
Homology
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|585104635|gb|EWM23530.1| (adenylosuccinate synthetase [Nannochloropsis gaditana])

HSP 1 Score: 329.331 bits (843), Expect = 4.461e-114
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MYHGLSLSFLLSGEKSHISVSTIVHLLLTETLSSPSLPFFSFLSPFLFSSLLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGGLQCRPHHLRRWKEIQATAWSSTSRS 163
            MYHGLSLSFLLSGEKSHISVSTIVHLLLTETLSSPSLPFFSFLSPFLFSSLLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGGLQCRPHHLRRWKEIQATAWSSTSRS
Sbjct:    1 MYHGLSLSFLLSGEKSHISVSTIVHLLLTETLSSPSLPFFSFLSPFLFSSLLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGGLQCRPHHLRRWKEIQATAWSSTSRS 163          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|669165020|ref|XP_008618072.1| (adenylosuccinate synthetase [Saprolegnia diclina VS20] >gi|530730182|gb|EQC28424.1| adenylosuccinate synthetase [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 2.595e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   59 MGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            MG + L A + P     +    + ++L+K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS +YDV+ARVAGG
Sbjct:   32 MGPTPLMANEVPLRDTTRGM--LREVLSKLNRIESAVANPKRDGPGVDVVLGAQWGDEGKGKLVDMLSQEYDVIARVAGG 109          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|673036698|ref|XP_008872310.1| (adenylosuccinate synthetase [Aphanomyces invadans] >gi|574471876|gb|ETV98882.1| adenylosuccinate synthetase [Aphanomyces invadans])

HSP 1 Score: 79.337 bits (194), Expect = 3.044e-14
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   47 LFSSLLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            +++S+ F S   M     P + +   +         ++L+K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS QYD++ RVAGG
Sbjct:   26 MYASMAFESKPLMANEVAPRDTTRGML--------REVLSKLNRIESAVANPKRDGPGVDVVLGAQWGDEGKGKLVDMLSQQYDIIVRVAGG 109          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|698807678|ref|XP_009836868.1| (adenylosuccinate synthetase [Aphanomyces astaci] >gi|574107933|gb|ETV73442.1| adenylosuccinate synthetase [Aphanomyces astaci])

HSP 1 Score: 78.9518 bits (193), Expect = 4.148e-14
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0
Query:   46 FLFSSLLFLSPSYMGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
             +++S+ F S   M     P + +   +         ++++K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS QYD++ RVAGG
Sbjct:   25 LMYASMAFESKPLMANEVAPRDTTRGML--------REVISKLNRIESAVANPKREGPGVDVVLGAQWGDEGKGKLVDMLSQQYDIIVRVAGG 109          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|1173934828|gb|OQR86053.1| (adenylosuccinate synthetase [Thraustotheca clavata])

HSP 1 Score: 78.5666 bits (192), Expect = 4.761e-14
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   81 VNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            + ++L+K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS +YDV+ARVAGG
Sbjct:   49 LREVLSKLNRIESAVANPKRDGPGVDVVLGAQWGDEGKGKLVDMLSQEYDVIARVAGG 106          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|813189941|ref|XP_012207570.1| (hypothetical protein SPRG_13184 [Saprolegnia parasitica CBS 223.65] >gi|641527483|gb|KDO21770.1| hypothetical protein SPRG_13184 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 78.1814 bits (191), Expect = 7.583e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   59 MGGSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            MG + L A + P     +    + ++L+K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS +YDV+ARVAGG
Sbjct:    7 MGPTPLMANEVPLRDTTRGM--LREVLSKLNRIESAVANPKRDGPGVDVVLGAQWGDEGKGKLVDMLSQEYDVIARVAGG 84          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|1173929247|gb|OQR82514.1| (adenylosuccinate synthetase [Achlya hypogyna])

HSP 1 Score: 77.0258 bits (188), Expect = 1.693e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   81 VNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            + ++L+K+ R+ES         P VDVVLG+QWGDEGKGKLVD+LS +YD++ARVAGG
Sbjct:   52 LREVLSKLNRIESAVANPKRDGPGVDVVLGAQWGDEGKGKLVDMLSQEYDIIARVAGG 109          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|635364540|emb|CCI47082.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 74.7146 bits (182), Expect = 1.030e-12
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 0
Query:   74 DMKKEEEVNQLLNKIRRVE---SQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            D   +E   Q+L ++ R+E   + S+R  + S  VDVVLG+QWGDEGKGKLVD+LS  YDV+ RVAGG
Sbjct:   91 DPTMKELWKQVLARLSRIEDAVTNSKRNTSTSACVDVVLGAQWGDEGKGKLVDMLSKSYDVIVRVAGG 158          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|695435253|ref|XP_009531643.1| (hypothetical protein PHYSODRAFT_347173 [Phytophthora sojae] >gi|348674395|gb|EGZ14214.1| hypothetical protein PHYSODRAFT_347173 [Phytophthora sojae])

HSP 1 Score: 70.4774 bits (171), Expect = 3.362e-11
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   61 GSTLPAEQSPAHVDMKKEEEVNQLLNKIRRVESQ----SRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            G+  P  +      M KE     ++ K+ R+ES      RR    +  VDVVLG+QWGDEGKGKLVD LS  YDV+ RVAGG
Sbjct:   80 GAAKPVSREAVTQAMLKE-----VVAKLNRIESAVANPHRRTDGLNAGVDVVLGAQWGDEGKGKLVDSLSQSYDVIVRVAGG 156          
BLAST of EWM23530.1 vs. NCBI_GenBank
Match: gi|325186364|emb|CCA20870.1| (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 69.3218 bits (168), Expect = 9.592e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   79 EEVNQLLNKIRRVESQSRRVPAPSPSVDVVLGSQWGDEGKGKLVDILSAQYDVVARVAGG 138
            +EV   LN+I    +  +R       VDVVLG+QWGDEGKGKLVD+LS  YDV+ RVAGG
Sbjct:   98 KEVLAKLNRIENAVANPKRNIDNLACVDVVLGAQWGDEGKGKLVDMLSKSYDVIVRVAGG 157          
The following BLAST results are available for this feature:
BLAST of EWM23530.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104635|gb|EWM23530.1|4.461e-114100.00adenylosuccinate synthetase [Nannochloropsis gadit... [more]
gi|669165020|ref|XP_008618072.1|2.595e-1450.00adenylosuccinate synthetase [Saprolegnia diclina V... [more]
gi|673036698|ref|XP_008872310.1|3.044e-1442.39adenylosuccinate synthetase [Aphanomyces invadans]... [more]
gi|698807678|ref|XP_009836868.1|4.148e-1440.86adenylosuccinate synthetase [Aphanomyces astaci] >... [more]
gi|1173934828|gb|OQR86053.1|4.761e-1460.34adenylosuccinate synthetase [Thraustotheca clavata... [more]
gi|813189941|ref|XP_012207570.1|7.583e-1450.00hypothetical protein SPRG_13184 [Saprolegnia paras... [more]
gi|1173929247|gb|OQR82514.1|1.693e-1358.62adenylosuccinate synthetase [Achlya hypogyna][more]
gi|635364540|emb|CCI47082.1|1.030e-1254.41unnamed protein product [Albugo candida][more]
gi|695435253|ref|XP_009531643.1|3.362e-1147.56hypothetical protein PHYSODRAFT_347173 [Phytophtho... [more]
gi|325186364|emb|CCA20870.1|9.592e-1156.67unnamed protein product [Albugo laibachii Nc14][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7160rna7160Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications