rna7158, rna7158 (mRNA) Nannochloropsis gaditana

Overview
Namerna7158
Unique Namerna7158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3533
Alignment locationCM002470.1:587109..587886 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100416g6.4403.mrna
Orig protein idgnl|cribi|Naga_100416g6.4403
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:587109..587886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100416g6gene6920Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23534.1cds7141Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7158rna7158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7158 ID=rna7158|Name=rna7158|organism=Nannochloropsis gaditana|type=mRNA|length=3533bp
TTTCATCTTACATCGTGACGAATAGGACTCTTAGGTTTTGTGCGGGCCCG
GCGCTGCTTTCTGAGGATAGGAGGATCTCAGTGTAGTAGGTATCAATTGA
TCTAAGGGGATCGGCCAAGCGATTTTTACACTTTACCCCGCTTGAACACG
CACACTTAACGTCATACATCGCCCCTTCATGGACAAGCCGTCAACCTCTC
TCCATCTTGCCATCCCGGACCCCGAAGAAGCCGCTTTCCTTCCCGTGGAT
GTTCACGTGGTACCCAAACGCGCTTCGCATCTGCCGACTTCCTCCCATAC
CTCGAGTACCAATGGGGCCCTGGCATTCGGCTCCGTCCATCCCCCACGGT
ACTTGCGTGCACCAAAAGGAGAAATCGACTATGCATCCGCCATGCCGGAC
GAGGTCCTGCACCGGATCCTCACCTTTGTCGATATAGACACAGGCGTGGC
TAGCACGATGTCGTCTCAACGGTGGCGGCCTTTGTTCGATGAACGGATCT
GCCAAGCCCACTGCGAACGCATTTACCTAGACCAGGCCCATGTAAAGCGA
CTGAACCCTGCGCGTTTCCAAGGGAGTTGGAAAGCCATGCTCCAAACACG
GCCCCGCGTCAGGACGAATGGATTCTACTTCCTCCTCTCCAGCTACATTA
AAAAACCTATCAAGGACATGTGGACAGAAATCACTCCAGGCACCATCTTG
GAAGTCCGTTACTACCGTTACCTCCGCTTTCTACCGGGCGGTCGACTAGT
CTACGCACTCCTCTACCTTCCTCCTCCCGAAGCAGTGAGTCTCTTCAAGG
AATACGAGGCGCACGTATCCAACCTCCCTCCCTCTACCTTGACTTCCACT
TCCTCTTCTTCGGCTTTGCGGGGCTGGGGCCCGCCAAGGAGGGACAGAAT
CAGAGAAAATGGTCGTACCGCAAGCATCAACACCACGGGGAACCCTCCGA
TCAGCGCCAATAGCAAGAAGAAAGAGTTGAATGAAGGTCTTTTCTGGATT
CACAAAGGCGCAGTTATCTGTGAGATACAAACTCCGTATTCCCGCATCCA
TTTCCAGTTCAAAATTTCGGCGAGGGAGGGGGGACTCGAAGGAGGGAGGG
AGGGAGGACACGAGGGAGGAAGGGGAAATTTTACCGCGTTGATGATGGAA
GAGCATACGAGTGTCGCACTCAATGACTCAACGGGAACACCCATACCGCA
TAAGCCCGCGTATGCTCCTTTGTTGTTTTACAAGGTCCCCGTGTGGTAAG
GGAATGTACAGAAGGTGGGGTGCACGGAGGAAAGGCCTGTAGATTGAACA
CTCGTAACCAATGAGTTATTGTGCAGGTCTCTATGTACCAAACATTGAGA
TATCATGATGCAGCGCCTATGTGGCGAGAGCTTTCGCAGAAACCTCCATG
ATGTAAAATTTAAGAAATATGTGCAACAATACTGAACAATGGGAGGAACA
GTATACCACATTGCGTCGCGAATGCGCAGTAACGTTTTCCGCCGGTTTCA
TGACTGATGTAATTCATTTCACCGTTAGAAGTGAGGTTTCCATCTGGCCG
ATGCGCGTTCTGAAGTTTTTACGACAGCCAGCGTGCCTCATCTCCAAAGT
TGAAAATTTAAAATTCAAAAATCCTCGCCATTGCCACGCAAACGGCCGCT
AGGCAACGGTGCACGAAAACCCTGCTTTTTCAAAAAAACTTAATAGCAAG
CCATGTGCTAGCACACAATAATATAAATATGCTTAAATGATTAATCCTTT
TAGAAAAAGTTTTGCCCATAGGACTGCTCACACGCTTTTATCGCAAGTTT
GCTGTGGGAATATTCTCTTCCCCGTACATGAGACTACTCAATGAGAAACC
CCTCAATTTAAATGACCCTGCACATAGCCGTTTGGGCCCTTGTTTTGCGC
AGATACGACAAAGAAGTCTGCAAGGAGCTAAGTTGACGGACTGCGAGGAA
GACAATTGTAGGAAAGATAGGGCCAAGAGTAAGCCACTTTTTTTCCCTTG
AGAGGGAAAGCTCATGGCGCCTGCACTACACGAGGCTGCGGCACGGGGAG
CCCTTACACTCATACTCCAACAGATCTCTGCATTTCCTGACCATCTGAAC
ACACGAGACAAGAGAGGGCGGACCCCTCTCATGTATGCCTGTCAGTGGGG
GCATTACCATATCTGTGCCTCATTATTGGATCATGGGGCACATCTCAACC
TCGTCGATCACGGGGGTCGACGCGCTTTATATTGGTCGTATGCATCCATG
GGAGCCAACATTAGAGTCGTGGAGCTCTTACTGGAAAGGGGGGCAGATTT
GAATGAGCCGTGGATGTCTCCAATGTTTTTCTCGTCCGTATCTCGACAGC
AGAATAAGCAAAGGAGAAGAAGAAGAGGGTGGATTGACGGAATGAGGGAA
GAGGCGGTCGTTGGAAGGCATGGGGGTGTCGATCGGGTGGATGAGGAGGA
GGAAGATGCGGCAGGAAAAGCAGAATGGCTCGATACCGACAGAGACTATG
GATTCCAGGGCGGTGGTGGGACGGTGTTGATGCATTCGTAAGCAGGGGGG
GAGAGAAGCGGGGAAAGAAGGGGCCGGGGGGAGAAGAGTGCCTATGGTCG
TGTGCTTTAATCATGCTTTCCCTTCGCTCGTTCACACCCTCAAATGCTTC
ACATCGTTCGAGCTCGACCTTTTTTGCCTCTCATTTTCGATCGTTCTCTC
CTCCTGAGCACAATTTTCCCCAAACTTCCCCCTCCCCTTCCTTCCTCCTC
CCGTCCCGCCTCCTGCAGAGCGGCGCTGGGTCAGGAGGAGATCGTCCGGC
TCCTATTGCGAAAGGGGAAGTGCGAGATTAATGCCCAGGACGAGCAAGGA
AGGACTGCTTTACATCATGCATGTGAACGAGGGAGGGAGGGGGTGGTCCG
GGCGTTACTTGAGGGAGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGG
AGGAAGGGACGGGGATCGATGTCACAGTCAAGGACTCAGGGGGTCGAACG
GCCCGGGAGATCGCGGAGATGTGGGGTCACGAAGAATGCGTGAGGCTTGT
GAGTGCCGAAGAGATCATCTACTTTCTGTGTAAGCTTAGATGGCTGGGTG
GGGTAAGCGAGGGAGGGAGGGAGGACGGGAAGAGACAGCCCCAAGTTTTT
TATTCGCGGGAAGACGAGGAGCCAATTCCCCTATGGGAGAAGAAAACACA
CACCAGGAGACGACAGGGGGGAAGGGGGGAGACGAGGGAGGACATGAACA
AACAGGCCGCGGTCCTGCAATTTGTGACAATGCAGCAGGACGACGGGGAG
GGTTTGCCCCGGGAATTGTTCCGAGAGTGGATGGAAAGATACATGGACCT
GAGGATCCCATTGGGGTTGCAGTGGTGAGAACGGGCAGGGAGGGGAGCAG
GGAAAGACGGGGGGGCACTGAAAGGGGGGAGAGGAGGAGGCTTGTGGGCG
TCGCCACGGACGGCACGACAAGGAAAGAGAGGAGAGAAGGGGAGGCGCGG
TAGCTGACACGATGAAGAGGAAAGGTATATATA
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protein sequence of rna7158

>rna7158-protein ID=rna7158-protein|Name=rna7158|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MNGVLKSGGCVVRKRVSIYMRAEGRRKMGPKGRGEGEETERDEQQGKMIY
GRRMGKACQPSVISRRKKGRREGREEGNFGIYPVAGEVWWMGLPTNQNSR
QHLRDYSLSPESVSRAIACVIGLTIYT
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mRNA from alignment at CM002470.1:587109..587886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7158 ID=rna7158|Name=rna7158|organism=Nannochloropsis gaditana|type=mRNA|length=778bp|location=Sequence derived from alignment at CM002470.1:587109..587886- (Nannochloropsis gaditana)
TTCTCTTGTGGTCTCACCCCCTCGACACATCAACCCCCTGCCGTCCCCGC
TGCTATTTCCCTTGCCAGACCTTCGAGGAACTTCCCCCCCAGGCTCGAGC
CTACGTGAAGCGCATCGAAGAGCTCGTGGGGGTGCCCGTCCGGTGGATCG
GTGTTGGTCCCGGGCGTCTGGACGTGATCGACAGAGGGGAGGGATATACG
CTCGAGGTCAAAGGAGTGAACAGAAGACAATTCTAAAGGTGGGAAGGGAA
CGAGCGAGACGGCGACGGGTGAGCGCTGGTGGGAATGCTATTGGAGTGGA
TTCAGGTGACAGGAGGGCAGTATTGTGATGGGACATGAATGGTGTCTTGA
AATCGGGGGGGTGCGTCGTGAGAAAGCGCGTTAGCATTTACATGCGCGCT
GAGGGAAGGAGGAAGATGGGTCCCAAAGGCCGGGGGGAGGGCGAGGAAAC
GGAAAGAGATGAGCAGCAAGGAAAGATGATATACGGTCGACGCATGGGTA
AGGCATGCCAGCCCTCAGTCATTTCGAGGAGGAAAAAAGGGAGGAGGGAA
GGAAGGGAGGAAGGGAACTTTGGGATTTATCCGGTGGCGGGAGAGGTTTG
GTGGATGGGCTTGCCAACAAATCAAAACTCTCGACAACACTTACGGGATT
ACAGTCTCAGTCCTGAGTCTGTATCAAGAGCAATTGCTTGCGTCATCGGC
CTGACTATATACACATAAATATTTATATATATATACCTTTCCTCTTCATC
GTGTCAGCTACCGCGCCTCCCCTTCTCT
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Coding sequence (CDS) from alignment at CM002470.1:587109..587886-

>rna7158 ID=rna7158|Name=rna7158|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002470.1:587109..587886- (Nannochloropsis gaditana)
ATGAATGGTGTCTTGAAATCGGGGGGGTGCGTCGTGAGAAAGCGCGTTAG
CATTTACATGCGCGCTGAGGGAAGGAGGAAGATGGGTCCCAAAGGCCGGG
GGGAGGGCGAGGAAACGGAAAGAGATGAGCAGCAAGGAAAGATGATATAC
GGTCGACGCATGGGTAAGGCATGCCAGCCCTCAGTCATTTCGAGGAGGAA
AAAAGGGAGGAGGGAAGGAAGGGAGGAAGGGAACTTTGGGATTTATCCGG
TGGCGGGAGAGGTTTGGTGGATGGGCTTGCCAACAAATCAAAACTCTCGA
CAACACTTACGGGATTACAGTCTCAGTCCTGAGTCTGTATCAAGAGCAAT
TGCTTGCGTCATCGGCCTGACTATATACACATAA
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Synonyms
Publications