EWM23534.1, cds7141 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23534.1
Unique Name	cds7141
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:587169..587552 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23534.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100416g6.4403.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:587169..587552 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23534.1 vs. NCBI_GenBank
Match: gi|585104642|gb|EWM23534.1| (hypothetical protein Naga_100416g6 [Nannochloropsis gaditana])

HSP 1 Score: 257.299 bits (656), Expect = 7.857e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query:    1 MNGVLKSGGCVVRKRVSIYMRAEGRRKMGPKGRGEGEETERDEQQGKMIYGRRMGKACQPSVISRRKKGRREGREEGNFGIYPVAGEVWWMGLPTNQNSRQHLRDYSLSPESVSRAIACVIGLTIYT 127
            MNGVLKSGGCVVRKRVSIYMRAEGRRKMGPKGRGEGEETERDEQQGKMIYGRRMGKACQPSVISRRKKGRREGREEGNFGIYPVAGEVWWMGLPTNQNSRQHLRDYSLSPESVSRAIACVIGLTIYT
Sbjct:    1 MNGVLKSGGCVVRKRVSIYMRAEGRRKMGPKGRGEGEETERDEQQGKMIYGRRMGKACQPSVISRRKKGRREGREEGNFGIYPVAGEVWWMGLPTNQNSRQHLRDYSLSPESVSRAIACVIGLTIYT 127

The following BLAST results are available for this feature:

BLAST of EWM23534.1 vs. NCBI_GenBank

BLAST of EWM23534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104642\|gb\|EWM23534.1\|	7.857e-87	100.00	hypothetical protein Naga_100416g6 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7158	rna7158	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications