EWM23552.1, cds7123 (CDS) Nannochloropsis gaditana

Overview
NameEWM23552.1
Unique Namecds7123
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:537309..537442 +
Alignment locationCM002470.1:537630..537723 +
Alignment locationCM002470.1:538044..538233 +
Alignment locationCM002470.1:538509..538642 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23552.1
ProductRibosomal protein S4/S9
Orig transcript idgnl|cribi|Naga_100857g1.6095.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:537309..537442 +
CM002470.1supercontigCM002470.1:537630..537723 +
CM002470.1supercontigCM002470.1:538044..538233 +
CM002470.1supercontigCM002470.1:538509..538642 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005840ribosome
GO:0005829cytosol
GO:0005739mitochondrion
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0019843rRNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR022801Ribosomal_S4/S9
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
Homology
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|553182606|ref|XP_005853756.1| (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|422295305|gb|EKU22604.1| U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|585104670|gb|EWM23552.1| Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 379.022 bits (972), Expect = 3.924e-133
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
            MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|585104671|gb|EWM23553.1| (Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 289.271 bits (739), Expect = 3.178e-98
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
            MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|298708363|emb|CBJ48426.1| (small nucleolar ribonucleoprotein U3 component [Ectocarpus siliculosus])

HSP 1 Score: 289.656 bits (740), Expect = 8.114e-98
Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
            MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L   DEFRIKMT+ LL KL+ MG+I TKKSL++ ET + S+FCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTDP FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|302848990|ref|XP_002956026.1| (hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis] >gi|300258752|gb|EFJ42986.1| hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis])

HSP 1 Score: 289.271 bits (739), Expect = 1.240e-97
Identity = 134/181 (74.03%), Postives = 159/181 (87.85%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
            MRQL++HEQKLLKKVDFL+WKSD N+RE+++LRRYHIQDR+DY KYNKICG ITKLT+ LK L P+D  RI++TD LL KLYNMG++PTKKSL QC+ LA +AFCRRRL VVMVR+KM+ETL+EA TFIEQGHVRVGP  VTDP F VTR+ EDF+TWVD+SK+KR V+ YNDKLDD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|857974999|emb|CEO98892.1| (hypothetical protein PBRA_007006 [Plasmodiophora brassicae])

HSP 1 Score: 283.493 bits (724), Expect = 2.586e-95
Identity = 132/183 (72.13%), Postives = 155/183 (84.70%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
            MRQL+HHEQ+LLKKVDFLQWK+DQ+ REI ILRRYHIQDREDYVKYN++CG I KL+ +L  L P D FR K T+ LL KLYNMGLI +KKSLS C  + AS+FCRRRLPVVMVR+KMAETL+EAVTFIE GHVRVGP VV DP  L+TR+ EDF+TW D+SKIKR ++ Y+D+LDD+DLLGN
Sbjct:    1 MRQLKHHEQRLLKKVDFLQWKTDQSQREITILRRYHIQDREDYVKYNRLCGVIKKLSNQLLALDPRDPFRCKTTEHLLEKLYNMGLITSKKSLSLCANITASSFCRRRLPVVMVRIKMAETLREAVTFIEAGHVRVGPNVVNDPAMLITRTLEDFVTWTDTSKIKRHIMKYSDQLDDYDLLGN 183          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|909139616|gb|KNE64830.1| (hypothetical protein AMAG_10166 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 279.641 bits (714), Expect = 8.805e-94
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
            +RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LL+KLYNMG +PTKK+LSQCE +  SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP VVTDP FLVTR+ EDF+TWVD+SKIKR ++ YNDKLDDFDLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKMTVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|909138045|gb|KNE63619.1| (ribosomal protein S4 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 279.256 bits (713), Expect = 1.197e-93
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
            +RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LL+KLYNMG +PTKK+LSQCE +  SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP VVTDP FLVTR+ EDF+TWVD+SKIKR ++ YNDKLDDFDLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|971507548|dbj|GAQ90652.1| (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Klebsormidium nitens])

HSP 1 Score: 278.1 bits (710), Expect = 3.581e-93
Identity = 124/182 (68.13%), Postives = 158/182 (86.81%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
            MR+L+ HEQKLLKKVDFLQWK++ N+RE++ +R+YHI DR+DY KYNK+CG +TKLT+ LK L P+D FRI++TD LL KLYNMG+IPT+KSL+ C+ L+ S+FCRRRL V++VR+K AET++EAVTF+EQGH+RVGP  VTDP FLV R+ EDF+TWVD+SKIKR V+ YNDKLDD+DLLG
Sbjct:    1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFCRRRLAVMLVRLKFAETMREAVTFVEQGHIRVGPETVTDPAFLVVRNMEDFVTWVDTSKIKRKVLKYNDKLDDYDLLG 182          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|159490712|ref|XP_001703317.1| (small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii] >gi|158280241|gb|EDP05999.1| small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii])

HSP 1 Score: 277.33 bits (708), Expect = 5.198e-93
Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
            MRQL+HHEQKLLKKVDFL+WKSD N+RE++++RRYHIQDR+DY KYNKI G +TKLT+ LK L  +D  R+++TD LL KL+ MG+IPTKKSL QC+ L  ++FCRRRL VVMVR+KMAETL+EA TFIEQGHVRVGP  VTDP F VTR+ EDF+TWVD+SK+KR V+ YNDKLDD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181          
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|551659837|ref|XP_005832687.1| (hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712] >gi|428176824|gb|EKX45707.1| hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712])

HSP 1 Score: 275.018 bits (702), Expect = 5.737e-92
Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
            MRQL++HE+KLLKKV+F QWKSD+N+REI+ILRRY +Q+R+DY KYNKI G ITKLT+KLK+L+ +D  R+K T+ L+ KLYNMGLI TKKSL QCE +  SAFCRRRLPVV+VR+K  E LKEAVTF+EQGH+R+GP VVTDP F VTRS EDF+TWVDSSKI+R V+ YND +DDFDLL
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLL 181          
The following BLAST results are available for this feature:
BLAST of EWM23552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182606|ref|XP_005853756.1|3.924e-133100.00U3 small nucleolar ribonucleoprotein IMP3 [Nannoch... [more]
gi|585104671|gb|EWM23553.1|3.178e-98100.00Ribosomal protein S4/S9 [Nannochloropsis gaditana][more]
gi|298708363|emb|CBJ48426.1|8.114e-9874.73small nucleolar ribonucleoprotein U3 component [Ec... [more]
gi|302848990|ref|XP_002956026.1|1.240e-9774.03hypothetical protein VOLCADRAFT_76931 [Volvox cart... [more]
gi|857974999|emb|CEO98892.1|2.586e-9572.13hypothetical protein PBRA_007006 [Plasmodiophora b... [more]
gi|909139616|gb|KNE64830.1|8.805e-9469.06hypothetical protein AMAG_10166 [Allomyces macrogy... [more]
gi|909138045|gb|KNE63619.1|1.197e-9369.06ribosomal protein S4 [Allomyces macrogynus ATCC 38... [more]
gi|971507548|dbj|GAQ90652.1|3.581e-9368.13Alpha-L RNA-binding motif/Ribosomal protein S4 fam... [more]
gi|159490712|ref|XP_001703317.1|5.198e-9370.72small nucleolar ribonucleoprotein U3 component [Ch... [more]
gi|551659837|ref|XP_005832687.1|5.737e-9270.72hypothetical protein GUITHDRAFT_138906 [Guillardia... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7140rna7140Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications