EWM23553.1, cds7122 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|585104671|gb|EWM23553.1| (Ribosomal protein S4/S9 [Nannochloropsis gaditana]) HSP 1 Score: 296.975 bits (759), Expect = 5.714e-102 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK 143
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK 143
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|553182606|ref|XP_005853756.1| (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|422295305|gb|EKU22604.1| U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|585104670|gb|EWM23552.1| Ribosomal protein S4/S9 [Nannochloropsis gaditana]) HSP 1 Score: 289.271 bits (739), Expect = 2.483e-98 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|302848990|ref|XP_002956026.1| (hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis] >gi|300258752|gb|EFJ42986.1| hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis]) HSP 1 Score: 225.713 bits (574), Expect = 3.485e-73 Identity = 104/138 (75.36%), Postives = 123/138 (89.13%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
MRQL++HEQKLLKKVDFL+WKSD N+RE+++LRRYHIQDR+DY KYNKICG ITKLT+ LK L P+D RI++TD LL KLYNMG++PTKKSL QC+ LA +AFCRRRL VVMVR+KM+ETL+EA TFIEQGHVRVGP
Sbjct: 1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGP 138
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|298708363|emb|CBJ48426.1| (small nucleolar ribonucleoprotein U3 component [Ectocarpus siliculosus]) HSP 1 Score: 220.705 bits (561), Expect = 3.393e-71 Identity = 103/138 (74.64%), Postives = 122/138 (88.41%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L DEFRIKMT+ LL KL+ MG+I TKKSL++ ET + S+FCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP
Sbjct: 1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGP 138
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|857974999|emb|CEO98892.1| (hypothetical protein PBRA_007006 [Plasmodiophora brassicae]) HSP 1 Score: 219.164 bits (557), Expect = 1.472e-70 Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
MRQL+HHEQ+LLKKVDFLQWK+DQ+ REI ILRRYHIQDREDYVKYN++CG I KL+ +L L P D FR K T+ LL KLYNMGLI +KKSLS C + AS+FCRRRLPVVMVR+KMAETL+EAVTFIE GHVRVGP
Sbjct: 1 MRQLKHHEQRLLKKVDFLQWKTDQSQREITILRRYHIQDREDYVKYNRLCGVIKKLSNQLLALDPRDPFRCKTTEHLLEKLYNMGLITSKKSLSLCANITASSFCRRRLPVVMVRIKMAETLREAVTFIEAGHVRVGPN 139
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|159490712|ref|XP_001703317.1| (small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii] >gi|158280241|gb|EDP05999.1| small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii]) HSP 1 Score: 213.386 bits (542), Expect = 2.762e-68 Identity = 98/138 (71.01%), Postives = 119/138 (86.23%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
MRQL+HHEQKLLKKVDFL+WKSD N+RE++++RRYHIQDR+DY KYNKI G +TKLT+ LK L +D R+++TD LL KL+ MG+IPTKKSL QC+ L ++FCRRRL VVMVR+KMAETL+EA TFIEQGHVRVGP
Sbjct: 1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGP 138
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|971507548|dbj|GAQ90652.1| (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Klebsormidium nitens]) HSP 1 Score: 209.534 bits (532), Expect = 6.982e-67 Identity = 92/138 (66.67%), Postives = 121/138 (87.68%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
MR+L+ HEQKLLKKVDFLQWK++ N+RE++ +R+YHI DR+DY KYNK+CG +TKLT+ LK L P+D FRI++TD LL KLYNMG+IPT+KSL+ C+ L+ S+FCRRRL V++VR+K AET++EAVTF+EQGH+RVGP
Sbjct: 1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFCRRRLAVMLVRLKFAETMREAVTFVEQGHIRVGP 138
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|909139616|gb|KNE64830.1| (hypothetical protein AMAG_10166 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 208.764 bits (530), Expect = 1.407e-66 Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
+RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L ++ L D F+ TD LL+KLYNMG +PTKK+LSQCE + SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP
Sbjct: 2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKMTVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGP 139
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|909138045|gb|KNE63619.1| (ribosomal protein S4 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 208.764 bits (530), Expect = 1.622e-66 Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
+RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L ++ L D F+ TD LL+KLYNMG +PTKK+LSQCE + SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP
Sbjct: 2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGP 139
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|551659837|ref|XP_005832687.1| (hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712] >gi|428176824|gb|EKX45707.1| hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712]) HSP 1 Score: 208.379 bits (529), Expect = 2.353e-66 Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
MRQL++HE+KLLKKV+F QWKSD+N+REI+ILRRY +Q+R+DY KYNKI G ITKLT+KLK+L+ +D R+K T+ L+ KLYNMGLI TKKSL QCE + SAFCRRRLPVV+VR+K E LKEAVTF+EQGH+R+GP
Sbjct: 1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGP 138 The following BLAST results are available for this feature:
BLAST of EWM23553.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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