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Properties
| Property Name | Value |
|---|
| Product | flavodoxin family protein |
| Orig transcript id | gnl|cribi|Naga_100631g3.6899.mrna |
| Orig protein id | gnl|cribi|Naga_100631g3.6899 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:525739..527307 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7133 ID=rna7133|Name=rna7133|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp
AAAGCAGAACAGCCGAGGTGCTGCATCGCATGATAGACGGGCATGGCTTT
GAATTAGGTCCGGATCCAGCTGTCGTTTGCGCGTTATCAGCGCACGTTGA
AGCCCTCAAGCCTTCTCAAGACGATTCAAAGCATGCCGCAGAACAAATAC
AACACCTATGATTATTTGATGGCGGTGTACGACTGGCTCTACCCTCCTCC
CCTACCTCCCCCTCCTCCCCCCCCCACCTTGGTGGAACGGGCTACCGATC
AGCTTACACAGGCATGGGCGGTAACCAAGCACTACGCCTCGATCTACTCC
TCCCTGGCGGTGCCCATCGTTGCGTCTCTCCTACTCCTTTTACTGCCCCT
CTTCATCTTCTTGTGGTCGAACGGCCCACCGGCCGCTGTTATGGAGGCGA
CCCCTGAGGAAAGCCACCCAGAGAAGGTTACGGATGAGGTAGTTGGGGGG
GAAAGGGAGGAAGTGGAAGTGGCGGCTAGAGAAGGCGTGGCAAGTGAAGG
AAAGACCCCGGAAACGGAGTGGAACGAGGAGGAGGATGGGGCATCCAAAG
AGACGGTTTGGAAGGGAGGGGAGGGCGAAGGACCTGTTGAAAGTGGGAAA
GAGGAAGGTATGCCAAAGGCGGTCGTTTCTTCGCCGGACACCTCTCCCAT
CTCCTCCTCCTCCTTACCATCGGCGCCCTCCTCCTTGTCCTCCTCCCCCT
TGGTCCTGGAGGGTCGAGGGCAGGGGGGAGGTGCGGGCCCCGAAATCGCC
GGTGGGGAGCCTACGCAAGAAGGAGGCAGTGGCACGGAGCCCGCGCCTCT
GACCACACGTACCTTGACGCCCAGAGCAGAGGCCGCGCAGGAAGCGCCCG
AGGTGGCGGGAGAGGGCTGTTGTGGAGGAGGGAGGGAAGGAGGGAGGGAA
GGAAGGTGCGGGTGCCAAGTTTCGGAAGAGAAGGGGGTGGAGCCGGAGGG
TGGACAGGGGCCGAAGGAAAGAAGGAAGGAAGGAGGGAGGGAGCGAGGGG
GCATCAAGCAGGTGCCGTTGCGGGTATTGGTGGGCTCCGGGACCGGGACC
GGGAGGAAGCTGGCTGAGGTCTTCCAGGTGGGGAGGGAGGGAGGGAGGGA
GGGACGGAGGAAGGGACGGGTGGAGGAGACGGGCGCGATACATCTTATCG
GTGTTGAGGAATATCATTCAACCGCACCTTCCTCGCTCCTCCTTCCCCTC
TTCCCTCGCAGAAAGAGGCCTTCGCCATGA back to topprotein sequence of rna7133 >rna7133-protein ID=rna7133-protein|Name=rna7133|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAF
AQAIADRTEGAPGRKRGREGGKERGRDGGMERGREGGAESGLSPWCFLWH
RHVLECSGPLSFVFLLISPPTSLAFSPPSSLPPSFPPSLLSLDTGEYEFM
AEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASD
YCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG back to topmRNA from alignment at CM002470.1:525739..527307+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7133 ID=rna7133|Name=rna7133|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at CM002470.1:525739..527307+ (Nannochloropsis gaditana)
TCGATCTGGGTTTCATGTCCAATCCGCCGCCTTTGTGATGTAAcgcaccg
ccctccttccctcccttcctccctccctctctccttccttctccatgggT
GGCAGGGACAACGGACGGTCTATCGCCTGACGCTGGTCAAGGCGTGGAAT
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTggtagggcgggagggag
ggagggagggagggagggagggagggcgggcgggagacgggaagaagggc
acaTGCTCACGCGGCTAGCGGGGCTCGCGGTCTCACACAGGGATGGGCAA
GCCGGACCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCA
TCTCCACGCTGCGgtgaggacgggagggggagggagggagggggagggac
ggtttgggcaggagcgagggagcgaagggggtgggaaaaCCGGGGAAGGT
CTGAGAGAATCAATATAAGTGGATGTGTCGATTAAAGCTTGCGCCTTCAA
TGGACAGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGTgcgcctgggaggaagagggg
gcgggaaggagggaaggagagagggagagatggagggatggagagaggga
gagagggaggagcagagaGTGGACTTTCCCCGTGGTGCTTCTTGTGGCAC
AGACATGTGCTGGAGTGTTCCGGCCCACTTTCTTTCGTATTCCTCCTTAT
TTCgcctcctacctccctcgctttctctcctccttcctccctccctccct
ccttccctccttccctcctttctttggATACAGGCGAATACGAATTCATG
GCGGAGCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTT
CtaccggggggggaaatggtaCACTTGGATCGACTATGCGAAATTCCACG
ATTTGATCGagcgggtagggaggagggattgcAGGGGGGGacagatgggg
aggaaggggaagaaggttgCAAAAAGGAGGTTTTGGAGGCAATCTCGAGT
AGCAAAGGCACTTAATTAGACCTgtattcctccttctccatttcttattt
cctttccccttctccctttccctgctcgCTGCCTCTGGGTCACTGAATAT
CGATGGACCGTGCGTTCAGTTCGAGAAGGATGGCACCGAATTCGACGCCT
CGGATTATTGCGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAA
GAGGGATTTGACCCTGTGGACACGCGTTTCAGGAGGAATAaggcgggcgt
ggtggaggaagtaCCATACAGGCCAACAGATAGTGGGTGCGGGTAGGGAC
GgagatggggggggaaggcgaggagggagaaaggagagaagagggccACA
AAAGACAAGAAGCAAAATTGATGGGCTTAGTGAACGTTGATGAGGCATAG
GACTAAGGGGCTAAGCGGTCGTTACTGAAACAGATGGTTTTAGCAGGGAA
TGTTTGGAAAGAAGAGTCACGAAAGATATGGGTGGCACAGCACCATCAAT
TACGTCGTGAAAAGAATTG back to topCoding sequence (CDS) from alignment at CM002470.1:525739..527307+ >rna7133 ID=rna7133|Name=rna7133|organism=Nannochloropsis gaditana|type=CDS|length=2964bp|location=Sequence derived from alignment at CM002470.1:525739..527307+ (Nannochloropsis gaditana)
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTgGGATGGGCAAGCCGGA
CCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCA
CGCTGCGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGTgcgcctgggaggaagagggg
gcgggaaggagggaaggagagagggagagatggagggatggagagaggga
gagagggaggagcagagaGTGGACTTTCCCCGTGGTGCTTCTTGTGGCAC
AGACATGTGCTGGAGTGTTCCGGCCCACTTTCTTTCGTATTCCTCCTTAT
TTCgcctcctacctccctcgctttctctcctccttcctccctccctccct
ccttccctccttccctcctttctttggATACAGGCGAATACGAATTCATG
GCGGAGCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTT
CtaccggggggggaaatggtaCACTTGGATCGACTATGCGAAATTCCACG
ATTTGATCGagcggTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGAT
TATTGCGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGG
ATTTGACCCTGTGGACACGCGTTTCAGGAGGAATAaggcgggcgtggtgg
aggaagtaCCATACAGGCCAACAGATAGTGGGTGCGGGTAGATGGCCGAG
GTGGACGGCTACGTGGAGCTGATTgGGATGGGCAAGCCGGACCTGATCGA
GATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCACGCTGCGAA
TGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTTGCCCAAGCT
ATCGCCGATCGGACGGAAGGTgcgcctgggaggaagagggggcgggaagg
agggaaggagagagggagagatggagggatggagagagggagagagggag
gagcagagaGTGGACTTTCCCCGTGGTGCTTCTTGTGGCACAGACATGTG
CTGGAGTGTTCCGGCCCACTTTCTTTCGTATTCCTCCTTATTTCgcctcc
tacctccctcgctttctctcctccttcctccctccctccctccttccctc
cttccctcctttctttggATACAGGCGAATACGAATTCATGGCGGAGCAC
GCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTTCtaccgggg
ggggaaatggtaCACTTGGATCGACTATGCGAAATTCCACGATTTGATCG
agcggTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGATTATTGCGCG
GAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTGACCC
TGTGGACACGCGTTTCAGGAGGAATAaggcgggcgtggtggaggaagtaC
CATACAGGCCAACAGATAGTGGGTGCGGGTAGATGGCCGAGGTGGACGGC
TACGTGGAGCTGATTgGGATGGGCAAGCCGGACCTGATCGAGATCAAGGG
GGTGACGTACTGTGGGAAGAGCGCCATCTCCACGCTGCGAATGGAGGAGA
ATGTGCCTTGGCACCACGAGGTGCGGGCCTTTGCCCAAGCTATCGCCGAT
CGGACGGAAGGTgcgcctgggaggaagagggggcgggaaggagggaagga
gagagggagagatggagggatggagagagggagagagggaggagcagaga
GTGGACTTTCCCCGTGGTGCTTCTTGTGGCACAGACATGTGCTGGAGTGT
TCCGGCCCACTTTCTTTCGTATTCCTCCTTATTTCgcctcctacctccct
cgctttctctcctccttcctccctccctccctccttccctccttccctcc
tttctttggATACAGGCGAATACGAATTCATGGCGGAGCACGCTCATTCC
TGCTGCACGCTTCTGGCGCGGAAAAAGACGTTCtaccggggggggaaatg
gtaCACTTGGATCGACTATGCGAAATTCCACGATTTGATCGagcggTTCG
AGAAGGATGGCACCGAATTCGACGCCTCGGATTATTGCGCGGAGACCCCC
GCATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTGACCCTGTGGACAC
GCGTTTCAGGAGGAATAaggcgggcgtggtggaggaagtaCCATACAGGC
CAACAGATAGTGGGTGCGGGTAGATGGCCGAGGTGGACGGCTACGTGGAG
CTGATTgGGATGGGCAAGCCGGACCTGATCGAGATCAAGGGGGTGACGTA
CTGTGGGAAGAGCGCCATCTCCACGCTGCGAATGGAGGAGAATGTGCCTT
GGCACCACGAGGTGCGGGCCTTTGCCCAAGCTATCGCCGATCGGACGGAA
GGTgcgcctgggaggaagagggggcgggaaggagggaaggagagagggag
agatggagggatggagagagggagagagggaggagcagagaGTGGACTTT
CCCCGTGGTGCTTCTTGTGGCACAGACATGTGCTGGAGTGTTCCGGCCCA
CTTTCTTTCGTATTCCTCCTTATTTCgcctcctacctccctcgctttctc
tcctccttcctccctccctccctccttccctccttccctcctttctttgg
ATACAGGCGAATACGAATTCATGGCGGAGCACGCTCATTCCTGCTGCACG
CTTCTGGCGCGGAAAAAGACGTTCtaccggggggggaaatggtaCACTTG
GATCGACTATGCGAAATTCCACGATTTGATCGagcggTTCGAGAAGGATG
GCACCGAATTCGACGCCTCGGATTATTGCGCGGAGACCCCCGCATGGGCC
CTCAAGGGGGCGCCCGAAGAGGGATTTGACCCTGTGGACACGCGTTTCAG
GAGGAATAaggcgggcgtggtggaggaagtaCCATACAGGCCAACAGATA
GTGGGTGCGGGTAG back to top
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