EWM23555.1, cds7116 (CDS) Nannochloropsis gaditana

Overview
NameEWM23555.1
Unique Namecds7116
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:525889..525922 +
Alignment locationCM002470.1:526029..526101 +
Alignment locationCM002470.1:526246..526702 +
Alignment locationCM002470.1:526908..527084 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23555.1
Productflavodoxin family protein
Orig transcript idgnl|cribi|Naga_100631g3.6899.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:525889..525922 +
CM002470.1supercontigCM002470.1:526029..526101 +
CM002470.1supercontigCM002470.1:526246..526702 +
CM002470.1supercontigCM002470.1:526908..527084 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR013917tRNA_wybutosine-synth
Homology
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|585104676|gb|EWM23555.1| (flavodoxin family protein [Nannochloropsis gaditana])

HSP 1 Score: 505.368 bits (1300), Expect = 0.000e+0
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPGRKRGREGGKERGRDGGMERGREGGAESGLSPWCFLWHRHVLECSGPLSFVFLLISPPTSLAFSPPSSLPPSFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPGRKRGREGGKERGRDGGMERGREGGAESGLSPWCFLWHRHVLECSGPLSFVFLLISPPTSLAFSPPSSLPPSFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG
Sbjct:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPGRKRGREGGKERGRDGGMERGREGGAESGLSPWCFLWHRHVLECSGPLSFVFLLISPPTSLAFSPPSSLPPSFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|585104675|gb|EWM23554.1| (flavodoxin family protein [Nannochloropsis gaditana])

HSP 1 Score: 220.705 bits (561), Expect = 8.034e-70
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 0
Query:  134 SFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            +F  ++     GEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG
Sbjct:   49 AFAQAIADRTEGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 161          

HSP 2 Score: 124.79 bits (312), Expect = 3.029e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG
Sbjct:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|1173954857|gb|OQS01994.1| (tRNA wybutosine-synthesizing protein [Thraustotheca clavata])

HSP 1 Score: 131.339 bits (329), Expect = 2.689e-31
Identity = 64/113 (56.64%), Postives = 74/113 (65.49%), Query Frame = 0
Query:  134 SFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            SF   L S   GEY    EHAHS C L+A K  F   G+W+TWIDY KFH L++++ KDGT F   DY A TP WA+  APE GFDPV+TRFRR K G V E+ Y  TDSGCG
Sbjct:  582 SFCELLCSKLDGEYGLATEHAHSNCVLIA-KTQFKIEGQWHTWIDYDKFHQLVQQYYKDGTTFTTMDYIARTPHWAVYDAPEHGFDPVETRFRRTKEGKVVEIEYTATDSGCG 693          

HSP 2 Score: 72.4034 bits (176), Expect = 6.149e-11
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPG 63
            M E+D YVELI +G+PDLIE+K VTYCGKS  S L + ++VP+H EVR+F + +  + +G  G
Sbjct:  535 MKEIDNYVELIQIGQPDLIEVKAVTYCGKSDASDLTI-KHVPYHEEVRSFCELLCSKLDGEYG 596          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|698787402|ref|XP_009826733.1| (hypothetical protein H257_04059 [Aphanomyces astaci] >gi|574117822|gb|ETV83303.1| hypothetical protein H257_04059 [Aphanomyces astaci])

HSP 1 Score: 128.642 bits (322), Expect = 2.847e-30
Identity = 61/102 (59.80%), Postives = 70/102 (68.63%), Query Frame = 0
Query:  145 GEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            G YE   EHAHS C L+A+ K F   G W+TWIDY KFH LI+ + KDGT F   DY A TPAWA+  APE GFDP++TRFRR K G V E+ Y  TDSGCG
Sbjct:  630 GGYELATEHAHSNCVLVAKTK-FKIDGHWHTWIDYDKFHTLIQAYYKDGTPFTTMDYIAPTPAWAVYNAPEAGFDPIETRFRRTKEGKVVEIEYTATDSGCG 730          

HSP 2 Score: 72.4034 bits (176), Expect = 6.485e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            M E+D YVELI +G+PDLIEIK VTYCGKS  S L M +NVP+H EVR F + +  +  G
Sbjct:  572 MKELDNYVELIHLGEPDLIEIKAVTYCGKSDASDLTM-QNVPYHQEVRDFCELLCAKLGG 630          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|675197091|ref|XP_008907430.1| (hypothetical protein PPTG_13478 [Phytophthora parasitica INRA-310] >gi|566020899|gb|ETI43810.1| hypothetical protein F443_11402 [Phytophthora parasitica P1569] >gi|567958283|gb|ETK83875.1| hypothetical protein L915_11092 [Phytophthora parasitica] >gi|567986975|gb|ETL37290.1| hypothetical protein L916_10990 [Phytophthora parasitica] >gi|568016253|gb|ETL90430.1| hypothetical protein L917_10899 [Phytophthora parasitica] >gi|568046629|gb|ETM43734.1| hypothetical protein L914_10925 [Phytophthora parasitica] >gi|568092245|gb|ETN07054.1| hypothetical protein PPTG_13478 [Phytophthora parasitica INRA-310] >gi|570324538|gb|ETO72486.1| hypothetical protein F444_11472 [Phytophthora parasitica P1976] >gi|570948364|gb|ETP13621.1| hypothetical protein F441_11319 [Phytophthora parasitica CJ01A1] >gi|570981210|gb|ETP41684.1| hypothetical protein F442_11287 [Phytophthora parasitica P10297] >gi|970616723|gb|KUF64869.1| S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Phytophthora nicotianae])

HSP 1 Score: 127.872 bits (320), Expect = 4.284e-30
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  135 FPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            F  +L    +G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+LI  + +DGT F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  599 FCSALCDRVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELIATYYEDGTPFTADDYTAPTPYWALYDSKEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 709          

HSP 2 Score: 78.1814 bits (191), Expect = 6.034e-13
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M +NVPWH EVR F  A+ DR  G
Sbjct:  551 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTM-KNVPWHEEVRGFCSALCDRVSG 609          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|325179738|emb|CCA14141.1| (tRNA wybutosinesynthesizing protein putative [Albugo laibachii Nc14])

HSP 1 Score: 127.872 bits (320), Expect = 4.426e-30
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  135 FPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            F  +L+    G Y   A+HAHS C LLA KKTFY   +W+TWIDY KFHDL++R+  DGT F +S+Y + TP+WA   APE+GFDP +TRF R K G + E  Y+ T+SGCG
Sbjct:  624 FCSALVEKTNGIYGLAAQHAHSNCVLLA-KKTFYIDEQWHTWIDYEKFHDLMDRYYTDGTLFSSSEYISLTPSWATFDAPEKGFDPCETRFYRTKNGKIAETSYQSTESGCG 734          

HSP 2 Score: 68.5514 bits (166), Expect = 1.133e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPG 63
            M +++ Y ELI +G+PD IE+K VTYCGKS  S L M ++VPWH EV  F  A+ ++T G  G
Sbjct:  576 MQDIEKYAELIEIGQPDFIEVKAVTYCGKSDGSDLTM-KHVPWHEEVVDFCSALVEKTNGIYG 637          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|970658684|gb|KUF96422.1| (sulfite oxidase [Phytophthora nicotianae])

HSP 1 Score: 127.872 bits (320), Expect = 4.436e-30
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  135 FPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            F  +L    +G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+LI  + +DGT F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  539 FCSALCDRVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELIATYYEDGTPFTADDYTAPTPYWALYDSKEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 649          

HSP 2 Score: 78.1814 bits (191), Expect = 6.753e-13
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M +NVPWH EVR F  A+ DR  G
Sbjct:  491 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTM-KNVPWHEEVRGFCSALCDRVSG 549          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|953502925|emb|CEG35693.1| (trna wybutosine-synthesizing protein 1 homolog [Plasmopara halstedii])

HSP 1 Score: 127.487 bits (319), Expect = 5.090e-30
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 0
Query:  134 SFPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            SF  +L    +G+Y   +EHAHS C L+A+KK FYR G W+TWIDY +FH+LI ++ +DGT F A +Y A TP WAL  + E+GFDP +TRFRR+K G V +  Y  T+SGCG
Sbjct:  544 SFCSALCDRVSGDYALASEHAHSNCVLIAKKK-FYREGVWHTWIDYDRFHELIAKYYEDGTLFTADEYIAPTPHWALYDSKEQGFDPAETRFRRSKDGKVVKFAYLSTESGCG 655          

HSP 2 Score: 78.9518 bits (193), Expect = 3.009e-13
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            M E+D Y ELI +G PD IE+K VTYCGKS  S L M +NVPWH EVR+F  A+ DR  G
Sbjct:  497 MEELDNYAELINIGHPDFIEVKAVTYCGKSDGSNLTM-QNVPWHEEVRSFCSALCDRVSG 555          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|635360837|emb|CCI50025.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 127.487 bits (319), Expect = 6.199e-30
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 0
Query:  135 FPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            F  +L+    G Y   A+HAHS C LLA KKTF   G+W+TWIDY KFHDL++R+  DGT F +S+Y + TP+WA   APE+GFDP +TRF R K G + E  Y+ T+SGCG
Sbjct:  623 FCTALVEKTNGVYGLAAQHAHSNCVLLA-KKTFCIDGQWHTWIDYEKFHDLMDRYYTDGTMFSSSEYISPTPSWATFDAPEKGFDPCETRFYRTKNGKIAETSYQSTESGCG 733          

HSP 2 Score: 68.5514 bits (166), Expect = 1.280e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEGAPG 63
            M +++ Y ELI +G+PD IE+K VTYCGKS  S L M ++VPWH EV  F  A+ ++T G  G
Sbjct:  575 MQDIEKYAELIEIGQPDFIEVKAVTYCGKSDGSDLTM-KHVPWHEEVCDFCTALVEKTNGVYG 636          
BLAST of EWM23555.1 vs. NCBI_GenBank
Match: gi|1214712839|gb|OWZ23760.1| (TRNA wybutosine-synthesizing protein [Phytophthora megakarya])

HSP 1 Score: 127.487 bits (319), Expect = 6.650e-30
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 0
Query:  135 FPPSLLSLDTGEYEFMAEHAHSCCTLLARKKTFYRGGKWYTWIDYAKFHDLIERFEKDGTEFDASDYCAETPAWALKGAPEEGFDPVDTRFRRNKAGVVEEVPYRPTDSGCG 246
            F  +L    +G+Y   +EHAHS C L+A+KK F R G W+TWIDY +FH+L+ ++ +DG+ F A DY A TP WAL  + E+GFDPV+TRFRR K G V E  Y+ T+SGCG
Sbjct:  601 FCSALCERVSGDYALASEHAHSNCVLIAKKK-FCRDGVWHTWIDYERFHELVAKYYEDGSTFTADDYTAPTPHWALYDSQEQGFDPVETRFRRTKDGKVVEFAYQSTESGCG 711          

HSP 2 Score: 75.8702 bits (185), Expect = 3.586e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAEVDGYVELIGMGKPDLIEIKGVTYCGKSAISTLRMEENVPWHHEVRAFAQAIADRTEG 60
            M E+D Y ELI +G+PD IE+K VTYCGKS  S L M +NVPWH EVR F  A+ +R  G
Sbjct:  553 MEELDNYAELINIGQPDFIEVKAVTYCGKSDGSDLTM-KNVPWHEEVRGFCSALCERVSG 611          
The following BLAST results are available for this feature:
BLAST of EWM23555.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104676|gb|EWM23555.1|0.000e+0100.00flavodoxin family protein [Nannochloropsis gaditan... [more]
gi|585104675|gb|EWM23554.1|8.034e-7091.15flavodoxin family protein [Nannochloropsis gaditan... [more]
gi|1173954857|gb|OQS01994.1|2.689e-3156.64tRNA wybutosine-synthesizing protein [Thraustothec... [more]
gi|698787402|ref|XP_009826733.1|2.847e-3059.80hypothetical protein H257_04059 [Aphanomyces astac... [more]
gi|675197091|ref|XP_008907430.1|4.284e-3054.46hypothetical protein PPTG_13478 [Phytophthora para... [more]
gi|325179738|emb|CCA14141.1|4.426e-3053.57tRNA wybutosinesynthesizing protein putative [Albu... [more]
gi|970658684|gb|KUF96422.1|4.436e-3054.46sulfite oxidase [Phytophthora nicotianae][more]
gi|953502925|emb|CEG35693.1|5.090e-3053.10trna wybutosine-synthesizing protein 1 homolog [Pl... [more]
gi|635360837|emb|CCI50025.1|6.199e-3053.57unnamed protein product [Albugo candida][more]
gi|1214712839|gb|OWZ23760.1|6.650e-3052.68TRNA wybutosine-synthesizing protein [Phytophthora... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7133rna7133Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications