EWM23575.1, cds7098 (CDS) Nannochloropsis gaditana

Overview
NameEWM23575.1
Unique Namecds7098
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:486216..486254 -
Alignment locationCM002470.1:485930..486021 -
Alignment locationCM002470.1:485490..485760 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23575.1
Productgalactokinase
Orig transcript idgnl|cribi|Naga_102210g1.2861.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:486216..486254 -
CM002470.1supercontigCM002470.1:485930..486021 -
CM002470.1supercontigCM002470.1:485490..485760 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013750GHMP_kinase_C_dom
Homology
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|585104710|gb|EWM23575.1| (galactokinase [Nannochloropsis gaditana])

HSP 1 Score: 261.536 bits (667), Expect = 2.669e-88
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVVNLKKKEEEKGRRGGGRGAGPIVSLGWGLVVLAAVVAVGIAVARRR 133
            MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVVNLKKKEEEKGRRGGGRGAGPIVSLGWGLVVLAAVVAVGIAVARRR
Sbjct:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVVNLKKKEEEKGRRGGGRGAGPIVSLGWGLVVLAAVVAVGIAVARRR 133          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|737666307|ref|WP_035635905.1| (galactokinase [Lachnospiraceae bacterium ND2006] >gi|1097611529|emb|SFK50186.1| galactokinase [Lachnospiraceae bacterium KH1T2])

HSP 1 Score: 104.76 bits (260), Expect = 3.735e-24
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAG 84
            M ESH SLRDDYEVSC ELD L  EA K+ GV+GSRMTGGGFGGCTVS+V  +AV   + +I+  Y+ R G++ E ++   S G
Sbjct:  300 MNESHVSLRDDYEVSCPELDVLAEEAWKIDGVVGSRMTGGGFGGCTVSIVKNEAVDKFQEEIRKVYKERTGLDCEFYIADASDG 383          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|1160620762|ref|WP_079482740.1| (galactokinase [Lachnospiraceae bacterium] >gi|1153980616|emb|SKB49305.1| galactokinase [Lachnospiraceae bacterium])

HSP 1 Score: 104.76 bits (260), Expect = 4.360e-24
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAG 84
            M ESH SLRDDYEVSC ELD L  EA K+PGV+GSRMTGGGFGGCTVS+V   AV     K+  AY  R G+ AE ++   + G
Sbjct:  300 MNESHVSLRDDYEVSCKELDILAEEAWKIPGVIGSRMTGGGFGGCTVSIVKNDAVDEFMEKVGKAYTERSGLVAEFYIADAADG 383          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|493963093|ref|WP_006906554.1| (galactokinase [Shuttleworthia satelles] >gi|229791897|gb|EEP28011.1| galactokinase [Shuttleworthia satelles DSM 14600])

HSP 1 Score: 104.76 bits (260), Expect = 4.871e-24
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVVNLKK 92
            M  SH SLRDDYEVSC E+D LV EA K+PGV+GSR+TGGGFGGCTVSLV   A+      + SAYR + G+EAE +      G G V L +
Sbjct:  314 MNASHISLRDDYEVSCREVDILVDEAWKIPGVIGSRITGGGFGGCTVSLVKNDAIDPFIDWVGSAYREKTGIEAEFYAVEIGDGAGRVTLSE 405          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|652829509|ref|WP_027114535.1| (galactokinase [Lachnospiraceae bacterium NK4A144])

HSP 1 Score: 104.375 bits (259), Expect = 5.526e-24
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAG 84
            M ESH SLRDDYEVSC ELD L  EA K+PGV+GSRMTGGGFGGCTVS+V   AV   + K+  AY  R G+ AE ++   + G
Sbjct:  300 MNESHVSLRDDYEVSCKELDILAEEAWKLPGVIGSRMTGGGFGGCTVSIVKNDAVEEFKEKVGKAYTERSGLVAEFYIADAADG 383          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|769125426|ref|WP_044907356.1| (galactokinase [Lachnospiraceae bacterium MC2017])

HSP 1 Score: 104.375 bits (259), Expect = 6.383e-24
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAG 84
            M ESH SLRDDYEVSC ELD L  EA K+PGV+GSRMTGGGFGGCTVS+V   AV   + K+  AY  R G+ AE ++   + G
Sbjct:  300 MNESHVSLRDDYEVSCKELDILAEEAWKLPGVIGSRMTGGGFGGCTVSIVKNDAVEEFKEKVGKAYTERTGLVAEFYIADAADG 383          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|653186430|ref|WP_027422799.1| (galactokinase [Lachnospiraceae bacterium AC3007])

HSP 1 Score: 104.375 bits (259), Expect = 6.460e-24
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVV 88
            M +SH SLRDDY VSC E+D LV EALK+PGV+GSR+TGGGFGGCTVS+V  ++V      +   YR R G+EAE ++T    G G +
Sbjct:  303 MIDSHVSLRDDYAVSCEEVDILVDEALKLPGVIGSRITGGGFGGCTVSIVKNESVDRFTGDLGRIYRERTGIEAEFYITDAGDGAGRI 390          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|769190694|ref|WP_044958639.1| (galactokinase [Shuttleworthia sp. MSX8B] >gi|576667771|gb|EUB17876.1| galactokinase [Shuttleworthia sp. MSX8B])

HSP 1 Score: 103.99 bits (258), Expect = 7.248e-24
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETF----------VTLP 81
            M  SH SLRDDYEVSC E+D LV EA K+PGV+GSR+TGGGFGGCTVSLV   A+     ++ SAYR + G+EAE +          VTLP
Sbjct:  303 MNASHISLRDDYEVSCREVDILVDEAWKIPGVIGSRITGGGFGGCTVSLVKNDAIDPFIDRVGSAYREKTGIEAEFYAVEIGDGARRVTLP 393          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|524241138|emb|CDA05681.1| (galactokinase [Blautia sp. CAG:257])

HSP 1 Score: 97.0561 bits (240), Expect = 8.480e-24
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVV 88
            M  SH SLRDDYEVSC E+D LV  A ++PGV+GSR+TGGGFGGCTVS+V   AV      I   Y+ + G EAE +V     G  V+
Sbjct:    1 MNASHVSLRDDYEVSCEEIDILVDLAWQIPGVIGSRITGGGFGGCTVSIVKNDAVDHFIDTIGKQYKEKVGHEAEFYVVDIGDGAHVI 88          
BLAST of EWM23575.1 vs. NCBI_GenBank
Match: gi|544317798|gb|ERL05330.1| (galactokinase [Oribacterium sp. oral taxon 078 str. F0263])

HSP 1 Score: 103.99 bits (258), Expect = 1.155e-23
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    1 MTESHASLRDDYEVSCSELDFLVSEALKVPGVLGSRMTGGGFGGCTVSLVTKQAVGMLEVKIKSAYRARFGVEAETFVTLPSAGCGVVNLKKKEEE 96
            M ESH SLRDDYEVSC ELD L SEA K  GV GSRMTGGGFGGCTVSLV K A+   + ++KS Y+  FG     +   P  G G   L+ + ++
Sbjct:  325 MNESHISLRDDYEVSCPELDLLTSEAWKTQGVFGSRMTGGGFGGCTVSLVHKDALPEFKKRLKSQYQKSFGYPCSFY--QPEVGGGPAELRIRRKK 418          
The following BLAST results are available for this feature:
BLAST of EWM23575.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104710|gb|EWM23575.1|2.669e-88100.00galactokinase [Nannochloropsis gaditana][more]
gi|737666307|ref|WP_035635905.1|3.735e-2457.14galactokinase [Lachnospiraceae bacterium ND2006] >... [more]
gi|1160620762|ref|WP_079482740.1|4.360e-2459.52galactokinase [Lachnospiraceae bacterium] >gi|1153... [more]
gi|493963093|ref|WP_006906554.1|4.871e-2456.52galactokinase [Shuttleworthia satelles] >gi|229791... [more]
gi|652829509|ref|WP_027114535.1|5.526e-2459.52galactokinase [Lachnospiraceae bacterium NK4A144][more]
gi|769125426|ref|WP_044907356.1|6.383e-2459.52galactokinase [Lachnospiraceae bacterium MC2017][more]
gi|653186430|ref|WP_027422799.1|6.460e-2455.68galactokinase [Lachnospiraceae bacterium AC3007][more]
gi|769190694|ref|WP_044958639.1|7.248e-2457.14galactokinase [Shuttleworthia sp. MSX8B] >gi|57666... [more]
gi|524241138|emb|CDA05681.1|8.480e-2453.41galactokinase [Blautia sp. CAG:257][more]
gi|544317798|gb|ERL05330.1|1.155e-2354.17galactokinase [Oribacterium sp. oral taxon 078 str... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7115rna7115Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications