rna7091, rna7091 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7091
Unique Name	rna7091
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1704
Alignment location	CM002470.1:425434..427137 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF2039
Orig transcript id	gnl\|cribi\|Naga_100139g4.4743.mrna
Orig protein id	gnl\|cribi\|Naga_100139g4.4743
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:425434..427137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g4	gene6856	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7091	rna7091-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23591.1	cds7074	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:425434..427137+
coding sequence from alignment at CM002470.1:425434..427137+

mRNA sequence

>rna7091 ID=rna7091|Name=rna7091|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
CACTTTGACACTTCCGCCCCCGACGCTGACACGTTCTGCGTAGAATGACA
CGTAAATATGGCCGTCTTTCAGGAAGCATAGTCCAGGAGGGGGTGGCCTC
AGAACGCGTGGGGTGTATTAAACGGGCCTCAGTGATCGACTTTGCGTCGC
GTGGCGCCTAGATGGCCACGTCAGCAAACATAGACGTGATACCAAAGGGT
TGGATATTTTATGTCACGTGGCTGTGGAAAGGCGCCTTCAAGCGACCTCG
CACTCTTACTTTGTGAGCCTTGGTCCCCGCAGTGGATAGCACGCATGTGT
CTTTTGCCTTCTTCCGTAGCCCAATTCGTACAAAGGGGCTGAAATTGTGG
GCCATTCTGGATAGGGGTTCTTGGGAGGATGACCTCCCACCCTACTGCTT
GTACTGAAGGTGAGACATCCCTTCCCACCATCAATTGTCAGCATGTTAGG
CTTATTTGTACGGTCATGGCACGATGCACGGCATCGATACATGCATATGA
CGATTTATCCCTTTTGTGTCGCGGATACACCGCATACGTCGATGTACCCT
CCACTTGACCTTCACCTCACGATGTCTACACTCCCACAAGCTGTCCCGCT
CTCATAAATACTCGCTTTGCTCCCCTATCACCTCCACCGACAAAACAATG
GGTCTGCCTGCCTATTGTTACACTCGTGCAGCACAGGTTATGAGCGGGCA
ACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACAATC
CCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGTCTC
TGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAAATA
CAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGAGTG
TCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGCGCC
GTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGGAGC
GGCTGCAGAAAAGGACGTGGAGGAGAAGCGCCGGGCGTTAGAGAGAGACA
TAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTTGAT
CGGTCGGGCGGAGATATGGATGTGGAAGGTGCTATGGAGGCGGTGGGATC
GGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATGATG
AGGATTCGGAAAGAGAGTGAGGGAGCGAGATATGGGGCAGGAGGGAAGGA
ATGGACGCCTCAAATGCGGAAAGTGTTGAGCATTGTGTTTAAAGGACGAG
GGCTGAAAGGACGAGGGCTGAGAGTATACACCTAGACTAGAACTTGTAAT
TAAACGGCTGAAAGTATCATCAAATGAGGCGATCTCTATGTTGAAAATGT
CGATTGTAGATCCAGGGAGGATGACGACCACCTCTTGAAGGCACACGTGG
TATCGAATTGTTACATTCTTTTTACAGGGTGTGTTGCCGGCATTATTAAT
GGAAGAAGACGTGGGATCAAAGAACTATGCCTTCATGTGGTACCTGATCA
AGGAGCCCACAGTTGGATACTACAGAGCTCTTCTTCCAAAAAGCTCTCCA
TGCAAGGGACCCCTTGACAAGCCCAGGATTCATTCCTAAGAGACCTTCCG
TGACAATCCATTATATGTCATATTCTAGCAATGTCAGTGGTTGGCCGAAT
GTCT

protein sequence of rna7091

>rna7091-protein ID=rna7091-protein|Name=rna7091|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MTSHPTACTEAQVMSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGL
CHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRA
VCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFD
RSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE

mRNA from alignment at CM002470.1:425434..427137+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7091 ID=rna7091|Name=rna7091|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
caCTTTGACACTTCCGCCCCCGACGCTGACACGTTCTGCGTAGAATGACA
CGTAAATATGGCCGTCTTTCAGGAAGCATAGtccaggagggggtggccTC
AGAACGCGTGGGGTGTATTAAACGGGCCTCAGTGATCGACTTTGCGTCGC
GTGGCGCCTAGATGGCCACGTCAGCAAACATAGACGTGATACCAAAGGGT
TGGATATTTTATGTCACGTGGCTGTGGAAAGGCGCCTTCAAGCGACCTCG
CACTCTTACTTTGTGAGCCTTGGTCCCCGCAGTGGATAGCACGCATGTGT
CTTTTGCCTTCTTCCGTAGCCCAATTCGTACAAAGGGGCTGAAATTGTGG
GCCATTCTGGATAGGGGTTCTTGGGAGGATGACCTCCCACCCTACTGCTT
GTACTGAAGGTGAGAcatcccttcccaccatCAATTGTCAGCATGTTAGG
CTTATTTGTACGGTCATGGCACGATGCACGGCATCGATACATGCATATGA
CGATTTATCCCTTTTGTGTCGCGGATACACCGCATACGTCGATGTACCCT
CCACTTGACCTTCACCTCACGATGTCTACACTCCCACAAGCTGTCCCGCT
CTCATAAATACTCGCTTTGCTCCCCTATCACCTCCACCGACAAAACAATG
GGTCTGCCTGCCTATTGTTACACTCGTGCAGCACAGGTTATGAGCGGGCA
ACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACAATC
CCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGTCTC
TGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAAATA
CAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGAGTG
TCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGCGCC
GTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGGAGC
GGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTTAGAGAGAGACA
TAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTTGAT
CGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggaggcggtgggatC
GGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATGATG
AGGATTCGGAAAGAGAGTGAGGGAGCGAGAtatggggcaggagggaagga
atggacgCCTCAAATGCGGAAAGTGTTGAGCATTGTGTTTAAAGGACGAG
GGCTGAAAGGACGAGGGCTGAGAGTATACACCTAGACTAGAACTTGTAAT
TAAACGGCTGAAAGTATCATCAAATGAGGCGATCTCTATGTTGAAAATGT
CGATTGTAGATccagggaggatgacgaccaCCTCTTGAAGGCACACGTGG
TATCGAATTGTTACATTCTTTTTACAGGGTGTGTTGCCGGCATTATTaat
ggaagaagacgtgggATCAAAGAACTATGCCTTCATGTGGTACCTGATCA
AGGAGCCCACAGTTGGATACTACAgagctcttcttccaaaaagCTCTCCA
TGCAAGGGACCCCTTGACAAGCCCAGGATTCATTCCTAAGAGACCTTCCG
TGACAATCCATTATATGTCATATTCTAGCAATGTCAGTGGTTGGCCGAat
gtct

Coding sequence (CDS) from alignment at CM002470.1:425434..427137+

>rna7091 ID=rna7091|Name=rna7091|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
ATGACCTCCCACCCTACTGCTTGTACTGAAGCACAGGTTATGAGCGGGCA
ACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACAATC
CCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGTCTC
TGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAAATA
CAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGAGTG
TCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGCGCC
GTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGGAGC
GGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTTAGAGAGAGACA
TAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTTGAT
CGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggaggcggtgggatC
GGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATGATG
AGGATTCGGAAAGAGAGTGAATGACCTCCCACCCTACTGCTTGTACTGAA
GCACAGGTTATGAGCGGGCAACGTCGTCGAGGACCTGCGCACCAGAATAC
ATTCGCGTTTCGACACAATCCCAAGAGCAAGAAAACCGAGCGCATCCTAG
CGTCTCCGATTGAGGGTCTCTGTCACCGATGCCATGAAAAAGTAGAATGG
CGAAAAAAATATAGGAAATACAAGCCACTTAGCGCCCCTGCAACATGCAC
CGGCTGTCACACCAAGAGTGTCCGTGCGGCGTACCACCAAATTTGTGACC
CGTGCGCTGAAAAGCGCGCCGTCTGCGCAGGTTGCGCTGAGCCCAAGTCG
ATTGTCAAGAAGACAGGAGCGGCTGCAgaaaaggacgtggaggagaagcg
ccgGGCGTTAGAGAGAGACATAAAAGGGTTACATTTGCGAAAGCAGCGCA
AAATTCTGAGAGAATTTGATCGGTCGGGCGGAGATATGGATGTGGAAGGT
GCtatggaggcggtgggatCGGACCTCGATGACGACGAAATAGGAGATAG
CGACGACAAAGAATATGATGAGGATTCGGAAAGAGAGTGA

Synonyms

Publications