rna7048, rna7048 (mRNA) Nannochloropsis gaditana

Overview
Namerna7048
Unique Namerna7048
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1994
Alignment locationCM002470.1:320373..321569 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100165g13.9684.mrna
Orig protein idgnl|cribi|Naga_100165g13.9684
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:320373..321569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100165g13gene6814Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7048rna7048-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23632.1cds7031Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7048 ID=rna7048|Name=rna7048|organism=Nannochloropsis gaditana|type=mRNA|length=1994bp
CTCTAACTCACTCATTTGAAACAGACATGACCCAACCATGGTATTCACGG
CGTACACGGAAGGCTATTTCGTCGCGAGTGATAATCTGCCTGGTGCTCGC
CACTTTGCCCCTGACAATAAATACTTTTACTCTGCCATGCCACATAATTC
ATCCACCCCGTGTCAATCAACCAAAGCCATGTGTTGTAAGGGCGACTTCT
TCCGTCGTGGAGGATTTTTCTTCCGATCAGCTGCGCGAAAAGCTGGAAGG
TGTCTGGGAAACGAACGTGCCCAGCTCGTTGAACGCAATAATCAAGGAAG
CTCAAGCATCGTTGGCTGCGGCCCTGCAGGCAGGCGAAAAGCGTTTGCGG
ATCGACATTCGAACGCCTGGATTGGACGAACAATTTGAGCAAACTGCCGC
TCGTGAGAAGGCCCTCCTTCTTGGTGTCATCGAAGCCTTTTTCCCGCTAT
TTGCAAACCGCCCCACCAAGATCCTCTTCGAGTCCGAGGGGGAGGCGGCG
ATGGCCGCAAAAGCCTACAGCCGGGGCTTCGAGATCCCAACTTCCTGCTC
CTTTTCTGGCCTTTCTCCCAGCTCTCTTTCAGACTCGGACGAGGTTGTGT
TCGTAGTGGAGCCCACGAACCGACCGGGCTCCCCCGTCATCGTCGCCCTC
GAGGCCCTCCTGGACGCCTGCCCGGGCAAGACCTTCGTCCTCTTCAATCC
CAACCTGGAGCCTGGGGGCGCGGGTCTGGGGATCCGAGAGAGGGACCGAC
GCCAGTCTTTTCTGGACTCCTTTCGCTCTGCCTACATCTATCTGTGCCTG
GCCTCCCTCTCGAGACCGGCCTTGGTCCCGCGGGAGCTCGGCAGCCTGCA
CTACCAGTACGAGACGGACAGATATCGGCTCCTGCGCTGCCTCCTCCCCG
AGGACGGGCCGGGGAGTTTGAACCGGTTCTTGAAACGCAGGATCTACGCC
ACGTCTCTGATTACGCCTACTGCAGAGGCCCCCCCCAATTTCTTCTCGGT
CCAGGAATGGGCGGGCGTCCGGCCGGGGCAGGAGGAGCTCTCTCGCGCCA
TGCAGGGCGCGGAGGCCGTCTTGGAGGGCTTGGTGCGGAAGATGTCGGGG
GAGGGCCCCCCGCCGGTGGAGACCGTGGAGGCGGCGAAGGATGTCCTGGT
GGAGGCGGCCCGGACGCGAGGAGTGGACCCGGAGCGGGTGGCTCGGGCCA
TCGGCTTCCTGGAGAAGGGGAGCCGGAAGGGCAAGAAGGGCCCCGAGGAG
AAGACGGCGGCCGCCGAGGAGCTGCGACGCCAGATACAAGGGCGTTGGCG
CTTGATCTTCACGACTGGAACCAAAGGGACGCAGGCGGCGGTGGGCAAGA
TCAACTATTTTCCCGTCAAGGCGGTGCAGAGCTTCGGGGTCTCCTCTCTC
CCCTCCTCCCCTTCCACCTCGTCTTCCTCCCTCTCCACCAATTACAGCAA
CGTCATCTACTTGGGGTCCTGGCCCTTGGTTCAGGTGCTCGGCTCCTTCT
CTTGTCCAGAAAACAAGAAACTGGAGTTCAAGGTGGAGAGCATTAAACTA
GGCCCGTTGGGCTTTGGGTCGCGCGGTGAGGGGTTCTTCACCTTCTTCTA
CGTGGACGAGGCCGTCGCGGTGGCCCGAGGCCAGGGAGGGGGGTTGGCCT
TGTGGTACCGGGAAAAGGAGGTGGAGGGGTAGGAGGAGGAGGGGGTGGCT
GGCAAGACGGTGGGAGGGAGTACAGGCGGGGTCGGTCGTGGCGTCTCAGT
TCAAGGACTAGGCCTTGGGTATCCAGGACGACGGCCCTTGGCTTGGAAGG
GAGTCTAGTCGCAGCGACGCTTGTCGTGCTGGTTGTGATGATAGTGTGTC
ATAACAGTATTCGCTTTCTCGAGTGGCTCGGGCCGGTATGTACGTTGAAG
AACAGTCTAGAGTGTGAAGCGCACTTCGGTCAGCTACCGATAAATACTGA
ATAAATGAAAAGCAGAATCTCATCGTGTGTATCGTCACCAAACG
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protein sequence of rna7048

>rna7048-protein ID=rna7048-protein|Name=rna7048|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MWAFALEEAGDLHRSAEVARSVLEEDPMDDIALHALVHTYEMVAARREGR
EAFREEGMPPSLFAHHIAWHRAVMALGWEEGGMEEGWEAVVWRVLDDVLL
KDEGRRAPATPLAMADASSLLWRMMLVGEGGGEDGEGEDRVMKRLHALRK
WYQEGGYEDMHSTSFNDVHMLMCLARVDLPAAHRALASMRRLAASAGERR
ALNRRGRGGSQRLHRQLRNWLVCQFFRLPFPPPRSSWLQRGWCAEDEFDG
RESFSVTTSSDFSSSLPTPQSTNAKVLAMVGLDVGAALIKFVEGDYAETV
RLLSASAPHWHLVGGSHAQRDVLALTLITACLRNRTDLARARRLLAERAM
EKDPENEEGTWTLLRQLEGQGRREGGDWEEKGCWEEKVYTRHLDNAEI
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mRNA from alignment at CM002470.1:320373..321569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7048 ID=rna7048|Name=rna7048|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp|location=Sequence derived from alignment at CM002470.1:320373..321569+ (Nannochloropsis gaditana)
ATGTGGGCCTTCgccttggaggaagcgggcgacCTGCACCGATCGGCGGA
GGTTGCGCGGAGCGTGTTGGAAGAGGACCCGATGGACGACATAGCCCTGC
ACGCACTTGTCCATACGTACGAGATGGTGGCCGCCCGTCGCGAGGGTAGG
GAAGCGtttcgggaggagggaatgccCCCGTCCTTGTTCGCGCACCACAT
TGCGTGGCACCGCGCCGTGATGGCTTTAggctgggaagagggggggatgg
aggaaggctgggagGCGGTGGTTTGGCGGGTGCTGGATGACGTCTTGCTG
AAGGAtgaggggcgaagggcgCCGGCCACGCCTTTAGCGATGGCAGATGC
CTCGAGTCTGCTGTGGAGGATGATGCTGGtcggcgagggggggggagaag
acggtgagggggaggacagggtaaTGAAACGGCTTCACGCTCTTCGTAAG
TGGTACCAGGAGGGTGGCTACGAAGACATGCATAGCACCAGCTTCAATGA
CGTGCACATGCTCATGTGTCTGGCTCGAGTCGATCTGCCCGCCGCGCATC
GGGCCTTGGCGTCCATGCGTCGTCTCGCGGCGTccgcgggggaaaggagg
gctctAAACAGGCGTGGACGTGGGGGTAGTCAACGATTGCACAGGCAGTT
GAGGAATTGGCTGGTCTGTCAGTTTTtccgtctcccttttcctcccccgc
ggtCCTCGTGGCTACAGCGGGGTTGGTGTGCCGAGGATGAAttcgacggg
agggagagcttcTCTGTCACTACCTCGTCagatttttcctcctccttgcc
caccccGCAGTCGACCAACGCTAAGGTCCTAGCAATGGTGGGATTGGACG
TCGGGGCTGCCCTGATCAAGTTCGTAGAGGGCGACTACGCGGAGACCGTC
CGCCTGCTCTCGGCCTCGGCCCCCCATTGGCACCTGGTGGGGGGCTCCCA
CGCCCAGCGAGACGTCCTGGCCCTGACGCTCATCACGGCTTGCTTACGGA
ATAGGACGGACTTGGCCCGGGCTCGGAGACTGTTGGCGGAAcgggcgatg
gagaaggacccggagaatgaggaagggaCTTGGACCTTGCTGCGGCAGCT
GGAGGGCcaaggaagacgggagggaggggattgggaggaaaaagggtgct
gggaggagaaggtgtaCACAAGACACCTGGATAACGCGGAGATATAa
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Coding sequence (CDS) from alignment at CM002470.1:320373..321569+

>rna7048 ID=rna7048|Name=rna7048|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002470.1:320373..321569+ (Nannochloropsis gaditana)
ATGTGGGCCTTCgccttggaggaagcgggcgacCTGCACCGATCGGCGGA
GGTTGCGCGGAGCGTGTTGGAAGAGGACCCGATGGACGACATAGCCCTGC
ACGCACTTGTCCATACGTACGAGATGGTGGCCGCCCGTCGCGAGGGTAGG
GAAGCGtttcgggaggagggaatgccCCCGTCCTTGTTCGCGCACCACAT
TGCGTGGCACCGCGCCGTGATGGCTTTAggctgggaagagggggggatgg
aggaaggctgggagGCGGTGGTTTGGCGGGTGCTGGATGACGTCTTGCTG
AAGGAtgaggggcgaagggcgCCGGCCACGCCTTTAGCGATGGCAGATGC
CTCGAGTCTGCTGTGGAGGATGATGCTGGtcggcgagggggggggagaag
acggtgagggggaggacagggtaaTGAAACGGCTTCACGCTCTTCGTAAG
TGGTACCAGGAGGGTGGCTACGAAGACATGCATAGCACCAGCTTCAATGA
CGTGCACATGCTCATGTGTCTGGCTCGAGTCGATCTGCCCGCCGCGCATC
GGGCCTTGGCGTCCATGCGTCGTCTCGCGGCGTccgcgggggaaaggagg
gctctAAACAGGCGTGGACGTGGGGGTAGTCAACGATTGCACAGGCAGTT
GAGGAATTGGCTGGTCTGTCAGTTTTtccgtctcccttttcctcccccgc
ggtCCTCGTGGCTACAGCGGGGTTGGTGTGCCGAGGATGAAttcgacggg
agggagagcttcTCTGTCACTACCTCGTCagatttttcctcctccttgcc
caccccGCAGTCGACCAACGCTAAGGTCCTAGCAATGGTGGGATTGGACG
TCGGGGCTGCCCTGATCAAGTTCGTAGAGGGCGACTACGCGGAGACCGTC
CGCCTGCTCTCGGCCTCGGCCCCCCATTGGCACCTGGTGGGGGGCTCCCA
CGCCCAGCGAGACGTCCTGGCCCTGACGCTCATCACGGCTTGCTTACGGA
ATAGGACGGACTTGGCCCGGGCTCGGAGACTGTTGGCGGAAcgggcgatg
gagaaggacccggagaatgaggaagggaCTTGGACCTTGCTGCGGCAGCT
GGAGGGCcaaggaagacgggagggaggggattgggaggaaaaagggtgct
gggaggagaaggtgtaCACAAGACACCTGGATAACGCGGAGATATAa
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Synonyms
Publications