rna7044, rna7044 (mRNA) Nannochloropsis gaditana

Overview
Namerna7044
Unique Namerna7044
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1997
Alignment locationCM002470.1:312289..313097 +

Link to JBrowse

Properties
Property NameValue
Productdna polymerase epsilon subunit 3
Orig transcript idgnl|cribi|Naga_100191g1.7769.mrna
Orig protein idgnl|cribi|Naga_100191g1.7769
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:312289..313097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100191g1gene6810Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7044rna7044-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23659.1cds7027Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7044 ID=rna7044|Name=rna7044|organism=Nannochloropsis gaditana|type=mRNA|length=1997bp
TTTCCACACGTCATCGCTGCTGCCACATCTACACACGGACAGGAAGCAAT
TAACGAACTATCTAAGCGCGAAAACACGGGATCAAGCCCTGACTTTTTCC
TTTACCCTCCCGCGGCCTGTCTGCCGCCTGGTCCTAATTCCTGTTTCCCA
TGACCGAGTCGACCTGCCAACAGAGCGTGGCCGGCCTCGATAACGCATTA
GAAGAGTTGTGCAAATTTCGAAGACAGCTAGAAGAAGAACGCAGAACTGA
ACTTCAAAGAGCACAGGAAAAGGACGCCTTATTGGAGACACAACAAAGTC
AGATAGAGGAGTTGCGAGAAGAGAATGAGTTATTGAGACAGAAAAATGCC
AGGCAGGCTGAGAAGATGCGTATGGTCATGAAAGCGATCAAGCGAGTGTC
GGGCGACGGTGTCCCAAGGGGAATGCCCGAGCAACAGTGCCCGGAGGAAA
CCGCATCTGAGAGCAGCGGGCAGACAAGCGTAGGGATATGCTCAAGAACT
ATTGACGGGTCGCATGGCATTAAATGGAGCGGTGGAGAAGGCACGCCGGC
AGGTGTACACTCATCCTGTAGCCAAGGTCTTCCAGTCGCTCCCTCTTCCC
GATCCAAACTGCGGGAGACTCAGTCAAAGCGGGAGCTTGGGGCCCATGAG
CACTTTTCGCGGGCAAAGAAAGAAGGGGGAAAGAACGCAATGGCGGTTCA
TGTCAAATGTCCGCCCTCGAAGGGAGATGAGCTGGTCATGGCAGACCACG
CAGAGCACGTATTCAAACCAAACTTCAAAATCCAGCCCCAGACAAAGGAA
TGCGTCCCCAAAGGAGCGGTGAAGGGTGGTGGAAGGGTCGAGCGGGGCTG
GTTGAAGGAGCCGCGCTTGCCTTTAGCGGACATGGGGAATGCACCCTACG
CCGAAAGACCCGGTGCGGCCGCCGCCCCCGTGTCGGCTGGCCTCGCCTCT
TCTGTCAGAGGCAGCAAGGACGAGTTTGAGCAAGCCTCTAGCCCCTCGTT
GGTATCGAGACCCCGTGGGACTGCTTCCCCTTCTCATCCGGGGGGTGCTG
GGCTCCCATTCATGCTCTCCTGCCCTGGCGCACACGGGGGGGACGAGGAT
AGTGGGAGTGGAGGAAGGGACAATGCACGGGAAGAAGAGGTAGAAAGCGA
AGAGCTCTTGGCAAACGCGGGGTCAGAACAATTACAGCGCATCCAAGAGC
CGCTCAGGAGGGGCCTGAAGCGTAGACCCTGGGAGCGTCCCCGGCCCTCA
GCCCGACCAACGTCCAGGCCCGAGCTAAGTGTTCACTCTCGAGACCGCGG
CCCGGCGTCGACAACCTGCGTGTCTCCCTCGCCGTCGGCCATGCTCTCGG
AGCCGGCGGCGGCGCTCGGTCTCCGCGTGGTCACTGGGGCGGGAGGGAGG
AAGCAGATTTCGCCAGGCAGTCATTGCCCTCCGTCCCCGCGGGGCGCCAG
CAAGCCTCAGTCAAGCCTTCCATCGCCCACAGGTCCAATCAAAGCGGCGC
ATAAGGTGCCACAACCGCAGCAGCACCAGCAGCATCGCTCCGTCCAAGTC
GTCCGAAGCCGCGAGACTCGCATGGCCTTGCCCGCATACGCATGCCCGGA
ATGCTCGGGCTTTTTGGACGCCGTCGGGGATCTCTTCGATCGGGAACAGA
TCTTGAAGAAGTGCTCTCGACACCGACATGCGCACAAGCCCTACGAGACG
CCGGAGGGCTTCTGGGACCTGTCCTTTCCGGACTCCCAGGACAAGCACTG
ACAGAAGGGACTGATCCTCTGGTTCCCATGCCCTTTCTTTTTTTCGGTGC
AAGCCAATTTGCTGTCACTGTGTGGAGATCAGGGACCTCGTCTGCTCTCA
AAGGAAAAGGGTCCAGGGTGAATGATGCGCGGGACAAAAAGGAATGAGAT
ATGTGTGTCAAAAAGCAATCGAGACATGGAGTGACTAAGTTACAGATGAC
TTCTTTCCCTTCAGGCGCCTACGCCACGTTTCTAACCCAGTTCTTAG
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protein sequence of rna7044

>rna7044-protein ID=rna7044-protein|Name=rna7044|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQIS
QLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVG
DSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALK
ELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH
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mRNA from alignment at CM002470.1:312289..313097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7044 ID=rna7044|Name=rna7044|organism=Nannochloropsis gaditana|type=mRNA|length=809bp|location=Sequence derived from alignment at CM002470.1:312289..313097+ (Nannochloropsis gaditana)
ATGGCAGGTATACCCGCTACCATGGTGGCACCGACCGCCATAGAAGGAGA
AATTTCGGAGCAGCAGCTGGTCCAGGAGCGGCATCTTGCAGCAGAGGCGT
CAAGCCTAGTAGATGGGGAAGAACAAGAGCAGGAAACAGGGCAGATTAGT
CAGCTAGAAACTACCAATCAACATGACAAGGACGATGGCAATGGCATCTc
gggcgagaaagaggcacCGACCGCAGCCACCGTAAGCAAGAGTCCGGAAT
TTGAGCCGCCCCTGTCCAGCGTCACCAAAATCATTCGACGGGCAGTAGGG
GACAGCGTGCAGGTCggcaaggaggcgaaggcgacTTTCACGCGCGTGGC
CGGCATATTTATCCTGTACATCACGGCCTGTGCGAACGACTTctcaaggg
aagggaaacggGCGACCATAACTGCCAACGACGTGTACCAGGCTTTGAAG
GAGTTGGAATTCGAAGACATGGTCGAGCCTCTACAAGAATTCTTGCGCCG
GTCGAacgaagagaagaaaaacaaAGCAGAGATCAAGGCAAttcgaaaga
gggaggcggcagaggaggaagtgggcgaCAGCggaggcgagaaagaggtg
ggTGTGTGCCGGGTGACAGGGGAGTGGGGGCCGGGACTTGCAGGGCGTGG
GGGCTTCAGATGgcgcgcgggggaggacaagggacgGGGAGCTAGAGGGT
GGCTACAGGGAAGAAAGACCTGCCTGAAAAGTTCTCGGTGGTCGTCCACT
TTCGTGTAACCCATTCTTTTCCCAATTTATTCGTTTACATGTCAGGACTC
TACCACTGa
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Coding sequence (CDS) from alignment at CM002470.1:312289..313097+

>rna7044 ID=rna7044|Name=rna7044|organism=Nannochloropsis gaditana|type=CDS|length=1647bp|location=Sequence derived from alignment at CM002470.1:312289..313097+ (Nannochloropsis gaditana)
ATGGCAGGTATACCCGCTACCATGGTGGCACCGACCGCCATAGAAGGAGA
AATTTCGGAGCAGCAGCTGGTCCAGGAGCGGCATCTTGCAGCAGAGGCGT
CAAGCCTAGTAGATGGGGAAGAACAAGAGCAGGAAACAGGGCAGATTAGT
CAGCTAGAAACTACCAATCAACATGACAAGGACGATGGCAATGGCATCTc
gggcgagaaagaggcacCGACCGCAGCCACCGTAAGCAAGAGTCCGGAAT
TTGAGCCGCCCCTGTCCAGCGTCACCAAAATCATTCGACGGGCAGTAGGG
GACAGCGTGCAGGTCggcaaggaggcgaaggcgacTTTCACGCGCGTGGC
CGGCATATTTATCCTGTACATCACGGCCTGTGCGAACGACTTctcaaggg
aagggaaacggGCGACCATAACTGCCAACGACGTGTACCAGGCTTTGAAG
GAGTTGGAATTCGAAGACATGGTCGAGCCTCTACAAGAATTCTTGCGCCG
aggaggaagtgggcgaCAGCggaggcgagaaagagGACTCTACCACTGaA
TGGCAGGTATACCCGCTACCATGGTGGCACCGACCGCCATAGAAGGAGAA
ATTTCGGAGCAGCAGCTGGTCCAGGAGCGGCATCTTGCAGCAGAGGCGTC
AAGCCTAGTAGATGGGGAAGAACAAGAGCAGGAAACAGGGCAGATTAGTC
AGCTAGAAACTACCAATCAACATGACAAGGACGATGGCAATGGCATCTcg
ggcgagaaagaggcacCGACCGCAGCCACCGTAAGCAAGAGTCCGGAATT
TGAGCCGCCCCTGTCCAGCGTCACCAAAATCATTCGACGGGCAGTAGGGG
ACAGCGTGCAGGTCggcaaggaggcgaaggcgacTTTCACGCGCGTGGCC
GGCATATTTATCCTGTACATCACGGCCTGTGCGAACGACTTctcaaggga
agggaaacggGCGACCATAACTGCCAACGACGTGTACCAGGCTTTGAAGG
AGTTGGAATTCGAAGACATGGTCGAGCCTCTACAAGAATTCTTGCGCCGa
ggaggaagtgggcgaCAGCggaggcgagaaagagGACTCTACCACTGaAT
GGCAGGTATACCCGCTACCATGGTGGCACCGACCGCCATAGAAGGAGAAA
TTTCGGAGCAGCAGCTGGTCCAGGAGCGGCATCTTGCAGCAGAGGCGTCA
AGCCTAGTAGATGGGGAAGAACAAGAGCAGGAAACAGGGCAGATTAGTCA
GCTAGAAACTACCAATCAACATGACAAGGACGATGGCAATGGCATCTcgg
gcgagaaagaggcacCGACCGCAGCCACCGTAAGCAAGAGTCCGGAATTT
GAGCCGCCCCTGTCCAGCGTCACCAAAATCATTCGACGGGCAGTAGGGGA
CAGCGTGCAGGTCggcaaggaggcgaaggcgacTTTCACGCGCGTGGCCG
GCATATTTATCCTGTACATCACGGCCTGTGCGAACGACTTctcaagggaa
gggaaacggGCGACCATAACTGCCAACGACGTGTACCAGGCTTTGAAGGA
GTTGGAATTCGAAGACATGGTCGAGCCTCTACAAGAATTCTTGCGCCGag
gaggaagtgggcgaCAGCggaggcgagaaagagGACTCTACCACTGa
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Synonyms
Publications