EWM23659.1, cds7027 (CDS) Nannochloropsis gaditana

Overview
NameEWM23659.1
Unique Namecds7027
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:312289..312788 +
Alignment locationCM002470.1:312851..312885 +
Alignment locationCM002470.1:313084..313097 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23659.1
Productdna polymerase epsilon subunit 3
Orig transcript idgnl|cribi|Naga_100191g1.7769.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:312289..312788 +
CM002470.1supercontigCM002470.1:312851..312885 +
CM002470.1supercontigCM002470.1:313084..313097 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Homology
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|585104812|gb|EWM23659.1| (dna polymerase epsilon subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 371.318 bits (952), Expect = 4.312e-130
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH 182
            MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH
Sbjct:    1 MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH 182          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|553188682|ref|XP_005854843.1| (DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422294223|gb|EKU21523.1| DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 292.738 bits (748), Expect = 1.229e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:   25 QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR 167
            QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR
Sbjct:    1 QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR 143          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|299116152|emb|CBN76059.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.405 bits (311), Expect = 6.135e-32
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 0
Query:   79 SKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRE 177
            +K+PEFEPP + V ++I+  + D+VQ+GK+AKA F+R AGIFI+Y+TACANDF RE KR TI+A DV QA+KELEF ++ EPL+E+L       Q RRE
Sbjct:    4 NKTPEFEPPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYL------DQYRRE 96          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|219112729|ref|XP_002178116.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411001|gb|EEC50930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.457 bits (267), Expect = 1.327e-25
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   69 EKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165
            EK  P  A V    EFEPPL+ V +I++  +  S  VGK+A A F R +GIFI+Y+TACANDF+R  KR TITANDV  A+KEL+F+D    +  FL
Sbjct:    8 EKTQPPPAAV----EFEPPLACVRRILKHTLPSSTNVGKDASAAFARASGIFIIYLTACANDFARTHKRQTITANDVLAAIKELDFDDFSTDMMSFL 100          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|676396807|ref|XP_009041681.1| (hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens] >gi|323447694|gb|EGB03606.1| hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens])

HSP 1 Score: 99.7525 bits (247), Expect = 3.895e-24
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLR--RGGSGRQRR 175
            +FEPP + + +I++ A+ DS QV +EAK  F + AGIFI+Y+T CAND  ++ KR T++A DV QA  ELE E+M + LQ+FL   R   G +R+
Sbjct:    1 DFEPPAACINRIVKAALPDSTQVTREAKTAFAKAAGIFIIYLTTCANDVCKDKKRQTVSAADVLQAFAELELEEMKDTLQDFLAHFRQAEGTKRK 95          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1210525295|dbj|GAX15915.1| (DNA polymerase epsilon subunit 3 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 5.236e-24
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0
Query:   83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165
            EFEPPL+ V ++++ ++  S  VGK+A A F R  GIFI+Y+TACANDF+RE KR TITANDV  A++EL+F+     +  FL
Sbjct:   22 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPDMTSFL 104          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1210528677|dbj|GAX12678.1| (DNA polymerase epsilon subunit 3 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 1.773e-22
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0
Query:   83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165
            EFEPPL+ V ++++ ++  S  VGK+A A F R  GIFI+Y+TACANDF+RE KR TITANDV  A++EL+F+     +  FL
Sbjct:  263 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPEMTSFL 345          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1072230577|gb|OEU15310.1| (hypothetical protein FRACYDRAFT_164395, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.3597 bits (233), Expect = 5.333e-22
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   87 PLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165
            P++ V +I+++ +  S  VGK+A A F R +GIFI+Y+TACANDF+RE +R TITANDV  A+KELEF++    L  FL
Sbjct:    1 PVACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFL 79          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|926632175|ref|XP_013781842.1| (PREDICTED: DNA polymerase epsilon subunit 3-like [Limulus polyphemus])

HSP 1 Score: 92.8189 bits (229), Expect = 7.068e-21
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 0
Query:   83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL-----------RRGGSGRQRRRE 177
            +F  P S +T+I++ A+ D V V KEA++ F++ A IF+LY T+ AN+F+ + KR T++ NDV  A++++EFE+ +EPLQE L             GG G+++R E
Sbjct:    7 DFNLPNSVITRIVKDALPDGVNVSKEARSAFSKAASIFVLYATSSANNFALKAKRKTLSGNDVLTAIEDMEFENFLEPLQESLEAFRKEKAKKNESGGKGKKKRPE 112          
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|955501816|ref|XP_004423409.2| (PREDICTED: DNA polymerase epsilon subunit 3 [Ceratotherium simum simum])

HSP 1 Score: 93.9745 bits (232), Expect = 1.295e-20
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   69 EKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165
            E  AP AA   +  +   P + +T+II+ A+ D V + KEA++  +R A +F+LY T+CAN+F+ +GKR T+ A+DV  A++E+EF+  + PL+E L
Sbjct:   60 ETWAPAAAMAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFINPLKEAL 156          
The following BLAST results are available for this feature:
BLAST of EWM23659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104812|gb|EWM23659.1|4.312e-130100.00dna polymerase epsilon subunit 3 [Nannochloropsis ... [more]
gi|553188682|ref|XP_005854843.1|1.229e-98100.00DNA polymerase epsilon subunit 3, partial [Nannoch... [more]
gi|299116152|emb|CBN76059.1|6.135e-3257.58conserved unknown protein [Ectocarpus siliculosus][more]
gi|219112729|ref|XP_002178116.1|1.327e-2552.58predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676396807|ref|XP_009041681.1|3.895e-2447.37hypothetical protein AURANDRAFT_16670, partial [Au... [more]
gi|1210525295|dbj|GAX15915.1|5.236e-2453.01DNA polymerase epsilon subunit 3 [Fistulifera sola... [more]
gi|1210528677|dbj|GAX12678.1|1.773e-2253.01DNA polymerase epsilon subunit 3 [Fistulifera sola... [more]
gi|1072230577|gb|OEU15310.1|5.333e-2253.16hypothetical protein FRACYDRAFT_164395, partial [F... [more]
gi|926632175|ref|XP_013781842.1|7.068e-2140.57PREDICTED: DNA polymerase epsilon subunit 3-like [... [more]
gi|955501816|ref|XP_004423409.2|1.295e-2041.24PREDICTED: DNA polymerase epsilon subunit 3 [Cerat... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7044rna7044Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications