EWM23659.1, cds7027 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|585104812|gb|EWM23659.1| (dna polymerase epsilon subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 371.318 bits (952), Expect = 4.312e-130 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 Query: 1 MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH 182 MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH Sbjct: 1 MAGIPATMVAPTAIEGEISEQQLVQERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRERGLYH 182
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|553188682|ref|XP_005854843.1| (DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422294223|gb|EKU21523.1| DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 292.738 bits (748), Expect = 1.229e-98 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 Query: 25 QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR 167 QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR Sbjct: 1 QERHLAAEASSLVDGEEQEQETGQISQLETTNQHDKDDGNGISGEKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRR 143
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|299116152|emb|CBN76059.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 124.405 bits (311), Expect = 6.135e-32 Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 0 Query: 79 SKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRE 177 +K+PEFEPP + V ++I+ + D+VQ+GK+AKA F+R AGIFI+Y+TACANDF RE KR TI+A DV QA+KELEF ++ EPL+E+L Q RRE Sbjct: 4 NKTPEFEPPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYL------DQYRRE 96
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|219112729|ref|XP_002178116.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411001|gb|EEC50930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 107.457 bits (267), Expect = 1.327e-25 Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 69 EKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165 EK P A V EFEPPL+ V +I++ + S VGK+A A F R +GIFI+Y+TACANDF+R KR TITANDV A+KEL+F+D + FL Sbjct: 8 EKTQPPPAAV----EFEPPLACVRRILKHTLPSSTNVGKDASAAFARASGIFIIYLTACANDFARTHKRQTITANDVLAAIKELDFDDFSTDMMSFL 100
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|676396807|ref|XP_009041681.1| (hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens] >gi|323447694|gb|EGB03606.1| hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens]) HSP 1 Score: 99.7525 bits (247), Expect = 3.895e-24 Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 0 Query: 83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLR--RGGSGRQRR 175 +FEPP + + +I++ A+ DS QV +EAK F + AGIFI+Y+T CAND ++ KR T++A DV QA ELE E+M + LQ+FL R G +R+ Sbjct: 1 DFEPPAACINRIVKAALPDSTQVTREAKTAFAKAAGIFIIYLTTCANDVCKDKKRQTVSAADVLQAFAELELEEMKDTLQDFLAHFRQAEGTKRK 95
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1210525295|dbj|GAX15915.1| (DNA polymerase epsilon subunit 3 [Fistulifera solaris]) HSP 1 Score: 102.834 bits (255), Expect = 5.236e-24 Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0 Query: 83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165 EFEPPL+ V ++++ ++ S VGK+A A F R GIFI+Y+TACANDF+RE KR TITANDV A++EL+F+ + FL Sbjct: 22 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPDMTSFL 104
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1210528677|dbj|GAX12678.1| (DNA polymerase epsilon subunit 3 [Fistulifera solaris]) HSP 1 Score: 102.834 bits (255), Expect = 1.773e-22 Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0 Query: 83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165 EFEPPL+ V ++++ ++ S VGK+A A F R GIFI+Y+TACANDF+RE KR TITANDV A++EL+F+ + FL Sbjct: 263 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPEMTSFL 345
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|1072230577|gb|OEU15310.1| (hypothetical protein FRACYDRAFT_164395, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 94.3597 bits (233), Expect = 5.333e-22 Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0 Query: 87 PLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165 P++ V +I+++ + S VGK+A A F R +GIFI+Y+TACANDF+RE +R TITANDV A+KELEF++ L FL Sbjct: 1 PVACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFL 79
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|926632175|ref|XP_013781842.1| (PREDICTED: DNA polymerase epsilon subunit 3-like [Limulus polyphemus]) HSP 1 Score: 92.8189 bits (229), Expect = 7.068e-21 Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 0 Query: 83 EFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL-----------RRGGSGRQRRRE 177 +F P S +T+I++ A+ D V V KEA++ F++ A IF+LY T+ AN+F+ + KR T++ NDV A++++EFE+ +EPLQE L GG G+++R E Sbjct: 7 DFNLPNSVITRIVKDALPDGVNVSKEARSAFSKAASIFVLYATSSANNFALKAKRKTLSGNDVLTAIEDMEFENFLEPLQESLEAFRKEKAKKNESGGKGKKKRPE 112
BLAST of EWM23659.1 vs. NCBI_GenBank
Match: gi|955501816|ref|XP_004423409.2| (PREDICTED: DNA polymerase epsilon subunit 3 [Ceratotherium simum simum]) HSP 1 Score: 93.9745 bits (232), Expect = 1.295e-20 Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 69 EKEAPTAATVSKSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFL 165 E AP AA + + P + +T+II+ A+ D V + KEA++ +R A +F+LY T+CAN+F+ +GKR T+ A+DV A++E+EF+ + PL+E L Sbjct: 60 ETWAPAAAMAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFINPLKEAL 156 The following BLAST results are available for this feature:
BLAST of EWM23659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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