EWM23651.1, cds7015 (CDS) Nannochloropsis gaditana

Overview
NameEWM23651.1
Unique Namecds7015
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:286399..286534 +
Alignment locationCM002470.1:286731..286785 +
Alignment locationCM002470.1:286956..287133 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23651.1
Productribosomal protein s21
Orig transcript idgnl|cribi|Naga_100191g16.7761.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:286399..286534 +
CM002470.1supercontigCM002470.1:286731..286785 +
CM002470.1supercontigCM002470.1:286956..287133 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
Homology
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|585104804|gb|EWM23651.1| (ribosomal protein s21 [Nannochloropsis gaditana])

HSP 1 Score: 250.366 bits (638), Expect = 3.593e-84
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122
            MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL
Sbjct:    1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210526498|dbj|GAX14679.1| (hypothetical protein FisN_11Hh219 [Fistulifera solaris])

HSP 1 Score: 77.0258 bits (188), Expect = 6.110e-16
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0
Query:    5 LVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
             + + +  LA  S AF P+         A   V +P   ET +    S  + + VGDGE I++A++RFKREV+KSGHL++LR  RY E +QE+AKRK  +AR + +  R+  R+
Sbjct:    6 FLFVLLAALATFSNAFAPA--------PAFGCVTRP---ETAM----SVKIKIEVGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|223993573|ref|XP_002286470.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220977785|gb|EED96111.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.485 bits (184), Expect = 1.035e-15
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 0
Query:   57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
            V+VG+GE I++A++RFKREVNKSGHL+DLR  RY E +Q++ KRK VQAR + R+ R+  R+
Sbjct:    2 VAVGEGEPIESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQARIRKRLERMQARR 63          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210531451|dbj|GAX09807.1| (hypothetical protein FisN_11Lh219 [Fistulifera solaris])

HSP 1 Score: 76.2554 bits (186), Expect = 1.471e-15
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   10 VGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
            +  LA  S AF P+         A   V +P   ET L  PV   ++V  GDGE I++A++RFKREV+KSGHL++LR  RY E +QE+AKRK  +AR + +  R+  R+
Sbjct:   11 LAALATISNAFAPA--------PAFGCVTRP---ETAL--PVKIKIVV--GDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|219111247|ref|XP_002177375.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411910|gb|EEC51838.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3218 bits (168), Expect = 2.058e-13
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 0
Query:   51 VSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRK 101
            +S  V V+VGDGE I++A++RFKREVNKSGHL++LR  RY E +QE+ KRK
Sbjct:    7 LSVKVKVAVGDGEPIESALRRFKREVNKSGHLMELRHKRYFENSQERIKRK 57          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|751565667|ref|WP_041034566.1| (MULTISPECIES: 30S ribosomal protein S21 [Nostocales] >gi|750917276|gb|KIJ77164.1| 30S ribosomal protein S21 [Tolypothrix campylonemoides VB511288] >gi|1115294899|gb|OKH57907.1| 30S ribosomal protein S21 [Scytonema sp. HK-05] >gi|1210124919|dbj|BAY44033.1| 30S ribosomal protein S21 [Scytonema sp. HK-05])

HSP 1 Score: 68.1662 bits (165), Expect = 5.288e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
            V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct:    4 VVLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210200603|dbj|BAZ19644.1| (30S ribosomal protein S21 [Scytonema sp. NIES-4073])

HSP 1 Score: 67.781 bits (164), Expect = 6.362e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
            V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct:    4 VLLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|504969936|ref|WP_015157038.1| (30S ribosomal protein S21 [Chroococcidiopsis thermalis] >gi|428011937|gb|AFY90500.1| SSU ribosomal protein S21P [Chroococcidiopsis thermalis PCC 7203] >gi|1213736527|gb|OWY69178.1| 30S ribosomal protein S21 [cyanobacterium TDX16])

HSP 1 Score: 67.781 bits (164), Expect = 7.093e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
            V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct:    4 VLLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|654347648|ref|WP_027841043.1| (30S ribosomal protein S21 [Mastigocoleus testarum] >gi|959129611|gb|KST64873.1| 30S ribosomal protein S21 [Mastigocoleus testarum BC008] >gi|959131870|gb|KST67046.1| 30S ribosomal protein S21 [Mastigocoleus testarum BC008])

HSP 1 Score: 67.0106 bits (162), Expect = 1.362e-12
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query:   55 VMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKAR 110
              V +G+ E ID+A++RFKR+V+K+G L D+++HR++ET QEK KRKAV ARRK R
Sbjct:    2 TQVVLGENEGIDSALRRFKRQVSKAGILADVKYHRHYETPQEKRKRKAVAARRKRR 57          
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1072227170|gb|OEU11910.1| (hypothetical protein FRACYDRAFT_263343 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.781 bits (164), Expect = 2.194e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0
Query:    5 LVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQAR 106
            L  L V  +A+ + AF P++        +A R   P  S       +  ++ V+VGDGE I++A++RFKR V+ SGH+++LR  RY E  QEK KRK  + R
Sbjct:    8 LSVLVVAVMALSTTAFAPAM-------HSAPR---PITS-------LDVNIKVNVGDGEPIESALRRFKRAVSNSGHMMELRHKRYFENKQEKTKRKIKEGR 92          
The following BLAST results are available for this feature:
BLAST of EWM23651.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104804|gb|EWM23651.1|3.593e-84100.00ribosomal protein s21 [Nannochloropsis gaditana][more]
gi|1210526498|dbj|GAX14679.1|6.110e-1639.47hypothetical protein FisN_11Hh219 [Fistulifera sol... [more]
gi|223993573|ref|XP_002286470.1|1.035e-1558.06predicted protein, partial [Thalassiosira pseudona... [more]
gi|1210531451|dbj|GAX09807.1|1.471e-1543.12hypothetical protein FisN_11Lh219 [Fistulifera sol... [more]
gi|219111247|ref|XP_002177375.1|2.058e-1362.75predicted protein, partial [Phaeodactylum tricornu... [more]
gi|751565667|ref|WP_041034566.1|5.288e-1360.00MULTISPECIES: 30S ribosomal protein S21 [Nostocale... [more]
gi|1210200603|dbj|BAZ19644.1|6.362e-1360.0030S ribosomal protein S21 [Scytonema sp. NIES-4073... [more]
gi|504969936|ref|WP_015157038.1|7.093e-1360.0030S ribosomal protein S21 [Chroococcidiopsis therm... [more]
gi|654347648|ref|WP_027841043.1|1.362e-1257.1430S ribosomal protein S21 [Mastigocoleus testarum]... [more]
gi|1072227170|gb|OEU11910.1|2.194e-1238.24hypothetical protein FRACYDRAFT_263343 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7032rna7032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications