EWM23651.1, cds7015 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|585104804|gb|EWM23651.1| (ribosomal protein s21 [Nannochloropsis gaditana]) HSP 1 Score: 250.366 bits (638), Expect = 3.593e-84 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122
MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL
Sbjct: 1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210526498|dbj|GAX14679.1| (hypothetical protein FisN_11Hh219 [Fistulifera solaris]) HSP 1 Score: 77.0258 bits (188), Expect = 6.110e-16 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0
Query: 5 LVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
+ + + LA S AF P+ A V +P ET + S + + VGDGE I++A++RFKREV+KSGHL++LR RY E +QE+AKRK +AR + + R+ R+
Sbjct: 6 FLFVLLAALATFSNAFAPA--------PAFGCVTRP---ETAM----SVKIKIEVGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|223993573|ref|XP_002286470.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220977785|gb|EED96111.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.485 bits (184), Expect = 1.035e-15 Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 0
Query: 57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
V+VG+GE I++A++RFKREVNKSGHL+DLR RY E +Q++ KRK VQAR + R+ R+ R+
Sbjct: 2 VAVGEGEPIESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQARIRKRLERMQARR 63
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210531451|dbj|GAX09807.1| (hypothetical protein FisN_11Lh219 [Fistulifera solaris]) HSP 1 Score: 76.2554 bits (186), Expect = 1.471e-15 Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0
Query: 10 VGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRK 118
+ LA S AF P+ A V +P ET L PV ++V GDGE I++A++RFKREV+KSGHL++LR RY E +QE+AKRK +AR + + R+ R+
Sbjct: 11 LAALATISNAFAPA--------PAFGCVTRP---ETAL--PVKIKIVV--GDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|219111247|ref|XP_002177375.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411910|gb|EEC51838.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 69.3218 bits (168), Expect = 2.058e-13 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 0
Query: 51 VSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRK 101
+S V V+VGDGE I++A++RFKREVNKSGHL++LR RY E +QE+ KRK
Sbjct: 7 LSVKVKVAVGDGEPIESALRRFKREVNKSGHLMELRHKRYFENSQERIKRK 57
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|751565667|ref|WP_041034566.1| (MULTISPECIES: 30S ribosomal protein S21 [Nostocales] >gi|750917276|gb|KIJ77164.1| 30S ribosomal protein S21 [Tolypothrix campylonemoides VB511288] >gi|1115294899|gb|OKH57907.1| 30S ribosomal protein S21 [Scytonema sp. HK-05] >gi|1210124919|dbj|BAY44033.1| 30S ribosomal protein S21 [Scytonema sp. HK-05]) HSP 1 Score: 68.1662 bits (165), Expect = 5.288e-13 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct: 4 VVLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1210200603|dbj|BAZ19644.1| (30S ribosomal protein S21 [Scytonema sp. NIES-4073]) HSP 1 Score: 67.781 bits (164), Expect = 6.362e-13 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct: 4 VLLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|504969936|ref|WP_015157038.1| (30S ribosomal protein S21 [Chroococcidiopsis thermalis] >gi|428011937|gb|AFY90500.1| SSU ribosomal protein S21P [Chroococcidiopsis thermalis PCC 7203] >gi|1213736527|gb|OWY69178.1| 30S ribosomal protein S21 [cyanobacterium TDX16]) HSP 1 Score: 67.781 bits (164), Expect = 7.093e-13 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 57 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARM 111
V +G+ E ID+A++RFKR+V+K+G L D+++HR+ ET QEK KRKAV ARRK RM
Sbjct: 4 VLLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPQEKRKRKAVAARRKRRM 58
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|654347648|ref|WP_027841043.1| (30S ribosomal protein S21 [Mastigocoleus testarum] >gi|959129611|gb|KST64873.1| 30S ribosomal protein S21 [Mastigocoleus testarum BC008] >gi|959131870|gb|KST67046.1| 30S ribosomal protein S21 [Mastigocoleus testarum BC008]) HSP 1 Score: 67.0106 bits (162), Expect = 1.362e-12 Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 55 VMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKAR 110
V +G+ E ID+A++RFKR+V+K+G L D+++HR++ET QEK KRKAV ARRK R
Sbjct: 2 TQVVLGENEGIDSALRRFKRQVSKAGILADVKYHRHYETPQEKRKRKAVAARRKRR 57
BLAST of EWM23651.1 vs. NCBI_GenBank
Match: gi|1072227170|gb|OEU11910.1| (hypothetical protein FRACYDRAFT_263343 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 67.781 bits (164), Expect = 2.194e-12 Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0
Query: 5 LVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQAR 106
L L V +A+ + AF P++ +A R P S + ++ V+VGDGE I++A++RFKR V+ SGH+++LR RY E QEK KRK + R
Sbjct: 8 LSVLVVAVMALSTTAFAPAM-------HSAPR---PITS-------LDVNIKVNVGDGEPIESALRRFKRAVSNSGHMMELRHKRYFENKQEKTKRKIKEGR 92 The following BLAST results are available for this feature:
BLAST of EWM23651.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|