rna7032, rna7032 (mRNA) Nannochloropsis gaditana

Overview
Namerna7032
Unique Namerna7032
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3126
Alignment locationCM002470.1:286180..287469 +

Link to JBrowse

Properties
Property NameValue
Productribosomal protein s21
Orig transcript idgnl|cribi|Naga_100191g16.7761.mrna
Orig protein idgnl|cribi|Naga_100191g16.7761
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:286180..287469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100191g16gene6798Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7032rna7032-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23651.1cds7015Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7032 ID=rna7032|Name=rna7032|organism=Nannochloropsis gaditana|type=mRNA|length=3126bp
CAATCACACAGGCGCATGATGGCTTGTGGATAATTGCTACATTCCTGGAG
AGGAGAATTTCAGCAACGGCTTGTCTTCCCGAGCTCTTACAGTTCTATCA
TGAGACTCCCGGACCGTCCGCATCAAGACGGAGGCATTGTTATTATTTTA
GGCATGCCGCCGGGATTTGAGTTTGGCATAGACATGCAGATAAATCAAGT
CGGGCCGAATTTTAGAGGTGTTGCCGGCGTGCCGATTGGCATCCATTTGT
TGACTTTTGGCACCGGCAAGGGCTTACGCCAAGGGTTTTTCATCAATATC
ACTCGGCCGTACGAGGTTATCGTGAAATCATGGAATGCATTGGATGAGGA
GCTGATTGAGGAGGGCACAGGTCTCCCTGAGGGTTCTATGCGGAGTCTCT
TGGACGCCCTGAAGCGTGGGGAGCTGAACAAGCACCTAGGAGCGTATCCA
GACAGTGCCCAGGGAGGACTCTGGCGGCAACTGACAAAGTATGTGACAGC
TGACGTTTTGAGCATGTGCGGCTTGGCTCTTGAGACGCGTATTCTACCTG
GCGATTGGGAAGAAGAAAACGTGCGTTCTCGAGGCGCGGGGGAGGAGGCG
GGAGAGGTGGTATCCCTCTGTCCCGGGGGGGGGCGTGCGGCTGTCTTCAC
TGACATGGGGGTGAGAGGCCGCCTCCGGGACAAGAAAGACATGACGCCTC
CTGCCTTGACGCGCTACCACATGGACCGCTCGGAATTGCTGGACGACATG
CTACGAGACGTTTATAGCAAGATGCCTGGGTCCTCGTCCACGGCCGCGAC
GGCAGCAAAGAAGCCCTCCCCCTCGTCCTTGCCCTTCCCCCCCTCCTCCT
CATCCCCGTCCGCCTGGATGAATCTCCTCGGGGAGCATCAGCTTGCTTTC
CTCCTCTTCCTCAACCTCTTTTCCATGGCGGGACTTAGGCACTGGAAGGA
AAGCACGGCCCTCCTGTGTCAGGTCTCCTCCGCCCTTCCTCGCCACCTCC
CCCTCTATCGCGCCTTCCTTAAGCTCCTTCGCGTTCAGCTCCAGACCGCG
CCCTCCGATTTCTTCGTGAACGAGGACGAAGTCGGCAAGGGCAGCTTCCT
GGGCCCCTCCCTCCAGAGCCTGATCCGCAACGTGAGGGAGGCTCGAGAGG
ACGGCGGCGGAGACGACATCCTCCGATGCGCGCGGACGTTCGCAGCTGCG
ATGGAGAAGGATTTCCCGGGCCTGGAGCTGGAGAGGCAACTGGATGTGAC
AGGAGGAGATATAGGCGGGGGGTTGACAGAGGGAGAGGAGGAGGAGGAGG
GCCCGCAGGTGCTGCCGTGGGAGGAGTATGAGCGGGTCATGCGGGGGCCG
ACGGCGGAGGAAGAGGAGTGTGGAGCCTCGGGGCAAGTAGATGAAAGGAG
GCTAAGGGAGCAGGAGAGGCCTGTGGGGCCGCTTGAGACGTTGGGAGAGG
AGGAAGCGGGGAGCGGAGTAAGTGGTGACGAGGCTGGGACGGGCGGTCGG
GAGGGGTCGTGAGAGGAGCGGGCGAGCAAGCCTAGTCGCGCGAGGGAGAC
GGAGAAAGTCGGAGGGGGATCAGACGAGGTCCTCGAAGGAGGAGGCCGTT
TGTGGGAGGGTGGTGGGGCGGGGCCTGCGCCTGGTCACGACTAAAGGAGC
AAGGCCGTGGGGTTTATGACAGAGGTTGTGGAGTGGGGGGGAGGGCATTC
ACAGGGAGATCGGCGGCAGGAGGCAAAGGGGGAAATGGGAGGTGCGTGCA
GTGGAGAGGGAAAGCTGTTCAAAGGAAGTAAAATAGGGGCATTAGATTCG
CGCACGGTGACAAACAGGCAGCGACGCGAAGGGCGACATCGCCTGGAATG
GGAGGGGGGGAGGCGCAGCAGTATGGCTTTAGAAAAGAAGCTCCGCCAGA
GGAGAGATTGTCTCGTTGTTTTTCACCAGTGCGTGGCATTAGTTCTACGG
TGTGCCCTCCCGGCCGGCCCTCGGGCACACGCAGCCTCTCCCTCTCTCCC
TCCGGCGTGGCGCCCATTTTAGAGCGCGCGCAAGGTATCGCTTCATCAAC
CCTCGATCGGATGCATTATCTACGGCATCCAACTCTTTCCCCGCCCTCGA
CCCATCCTTAGAGCTTCTGACCCTTGCGCAGGGAGAGGCGAAGCATGCGG
GCCTTCCTGCGCGCCTGTACGGCCTTGCGCTTGGCTTTCTCTTGATTCGT
TTCGTGGTATCGGTGGAAACGCAGGTCGAGGAGGTGCCCCGACTTGTTCA
CTTCGCGCTTGAAGCGCTTGACCGCGTTGTCAATGCTGTAGAAGGAGGGG
AATGGAAACCCACTGGATCAGTCAATGATCGGCCGTTCGGTGGTGGGCCG
TGAATAGTCCACGACTAGGAAACGGGATACGCAATTCAGGGCATCTTTGT
TATCTTTGCACCGGGCTTTCCTCCTCAAATCTATCGGCCATTACATCACA
CTTACTTCTCGCCGTCCCCCACAGAAACCATCACATCTGTTGACACCGGT
ACGCGCAGGCCTGAGGGGGAAGAGCGTGCATGATACATGTGAGAGAAGAG
ATTGAGTGAAAATAAGAATGCGTGGCAGATGCCAACTTGCGATTAAGGCC
ACGCTTCATCTTTGTCACCACACGCAATGTCTCGATCCGCTCCTCGATAT
AATAAGCTTCACCACCCATGGGAGGGGCCCGGCTGAAATGAATATCTCAC
ACGTACCGGTTTCAGATTGAGCGGGCTGATAGACGCGGGCAGCGGCAGAG
GAGCTGATTTTGACCATAGGCAAGGATGGCATGAAGGCCTGGGAGCCGAC
AGCGAGGGTGCCCACTGCCAGACATACCAGTTTCTTGAACATGGTAGTTT
CTATGTGTGTTTATATACATGCGACGCGTCGTGAAATTCCGGAGCTTGAG
TGCATAGAGGGACAACTGAGGGAGTCCGGATACGAAAGCAGAGTGTCGTT
TTCATCGTGGGGTGGACTGTAAGGCCCCCACCCCTTGTCAACAACACGCG
ACCAGCATATGACTTCTGCTAAGATTCCACAAACTTGCACGCTGTCCATT
GCACGAGACGATGACACTATTGAGAGCCTTGTCCACTCATGCAAGGGAAA
AACAGAGTGGCTCGATCCCGACTCCC
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protein sequence of rna7032

>rna7032-protein ID=rna7032-protein|Name=rna7032|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVP
VSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKR
KAVQARRKARMLRLSLRKGQKL
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mRNA from alignment at CM002470.1:286180..287469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7032 ID=rna7032|Name=rna7032|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp|location=Sequence derived from alignment at CM002470.1:286180..287469+ (Nannochloropsis gaditana)
TCGTCTCGTGCAATGGACAGCGTGCAAGTTTGTGGAATCTTAGCAGAAGT
CATATGCTGGTCGCGTGTTGTTGACAAGGGGTGGGGGCCTTACAGTCCAC
CCCACGATGAAAACGACACTCTGCTTTCGTATCCGGACTCCCTCAGTTGT
CCCTCTATGCACTCAAGCTCCGGAATTTCACGACGCGTCGCATGTATATA
AACACACATAGAAACTACCATGTTCAAGAAACTGGTATGTCTGGCAGTGG
GCACCCTCGCTGTCGGCTCCCAGGCCTTCATGCCATCCTTGCCTATGGTC
AAAATCAGCTCCTCTGCCGCTGCCCGCGTCTATCAGCCCGCTCAATCTGA
AACCGGTACGTGTGAGATATTCATTTCAGCCGGGCCCCTCCCATGGGTGG
TGAAGCTTATTATATCGAGGAGCGGATCGAGACATTGCGTGTGGTGACAA
AGATGAAGCGTGGCCTTAATCGCAAGTTGGCATCTGCCACGCATTCTTAT
TTTCACTCAATCTCTTCTCTCACATGTATCATGcacgctcttccccctca
ggCCTGCGCGTACCGGTGTCAACAGATGTGATGGTTTCTGTGGGGGACGG
CGAGAAGTAAGTGTGATGTAATGGCCGATAGatttgaggaggaaagcccg
GTGCAAAGATAACAAAGATGCCCTGAATTGCGTATCCCGTTTCCTAGTCG
TGGACTATTCACGGCCCACCACCGAACGGCCGATCATTGACTGATCCAGT
GGGTTTccattcccctccttctacaGCATTGACAACGCGGTCAAGCGCTT
CAAGCGCGAAGTGAACAAGTCGGGGCACCTCCTCGACCTGCGTTTCCACC
GATACCACGAAACGAATCAAGAGAAAGCCAAGCGCAAGGCCGTACAGGCG
CGCAGGAAGGCCCGCATGCTTCGCCTCTCCCTGCGCAAGGGTCAGAAGCT
CTAAGGAtgggtcgagggcggggaaagagttGGATGCCGTAGATAATGCA
TCCGATCGAGGGTTGATGAAGCGATACCTTGCGCGCGCTCTAAAATGGGC
GCCacgccggagggagagagggagaggctgcgTGTGCCCGAGGGCCGGCC
GGGAGGGCACACCGTAGAACTAATGCCACGCACTGGTGAAAAACAACGAG
ACAATCTCTCCTCTGGCGGAGCTTCTTTTCTAAAGCCATACtgctgcgcc
tccccccctcccattccaggCGATGTCGCCCTTCGCGTCGCTGCCTGTTT
GTCACCGTGCGCGAATCTAATGCCCCTATTTTACTTCCTT
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Coding sequence (CDS) from alignment at CM002470.1:286180..287469+

>rna7032 ID=rna7032|Name=rna7032|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at CM002470.1:286180..287469+ (Nannochloropsis gaditana)
ATGTTCAAGAAACTGGTATGTCTGGCAGTGGGCACCCTCGCTGTCGGCTC
CCAGGCCTTCATGCCATCCTTGCCTATGGTCAAAATCAGCTCCTCTGCCG
CTGCCCGCGTCTATCAGCCCGCTCAATCTGAAACCGgCCTGCGCGTACCG
GTGTCAACAGATGTGATGGTTTCTGTGGGGGACGGCGAGAACATTGACAA
CGCGGTCAAGCGCTTCAAGCGCGAAGTGAACAAGTCGGGGCACCTCCTCG
ACCTGCGTTTCCACCGATACCACGAAACGAATCAAGAGAAAGCCAAGCGC
AAGGCCGTACAGGCGCGCAGGAAGGCCCGCATGCTTCGCCTCTCCCTGCG
CAAGGGTCAGAAGCTCTAAATGTTCAAGAAACTGGTATGTCTGGCAGTGG
GCACCCTCGCTGTCGGCTCCCAGGCCTTCATGCCATCCTTGCCTATGGTC
AAAATCAGCTCCTCTGCCGCTGCCCGCGTCTATCAGCCCGCTCAATCTGA
AACCGgCCTGCGCGTACCGGTGTCAACAGATGTGATGGTTTCTGTGGGGG
ACGGCGAGAACATTGACAACGCGGTCAAGCGCTTCAAGCGCGAAGTGAAC
AAGTCGGGGCACCTCCTCGACCTGCGTTTCCACCGATACCACGAAACGAA
TCAAGAGAAAGCCAAGCGCAAGGCCGTACAGGCGCGCAGGAAGGCCCGCA
TGCTTCGCCTCTCCCTGCGCAAGGGTCAGAAGCTCTAAATGTTCAAGAAA
CTGGTATGTCTGGCAGTGGGCACCCTCGCTGTCGGCTCCCAGGCCTTCAT
GCCATCCTTGCCTATGGTCAAAATCAGCTCCTCTGCCGCTGCCCGCGTCT
ATCAGCCCGCTCAATCTGAAACCGgCCTGCGCGTACCGGTGTCAACAGAT
GTGATGGTTTCTGTGGGGGACGGCGAGAACATTGACAACGCGGTCAAGCG
CTTCAAGCGCGAAGTGAACAAGTCGGGGCACCTCCTCGACCTGCGTTTCC
ACCGATACCACGAAACGAATCAAGAGAAAGCCAAGCGCAAGGCCGTACAG
GCGCGCAGGAAGGCCCGCATGCTTCGCCTCTCCCTGCGCAAGGGTCAGAA
GCTCTAA
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Synonyms
Publications