rna7011, rna7011 (mRNA) Nannochloropsis gaditana

Overview
Namerna7011
Unique Namerna7011
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1650
Alignment locationCM002470.1:233052..233924 +

Link to JBrowse

Properties
Property NameValue
Productsterol 4-alpha-methyl-oxidase
Orig transcript idgnl|cribi|Naga_100030g32.4170.mrna
Orig protein idgnl|cribi|Naga_100030g32.4170
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:233052..233924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g32gene6777Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7011rna7011-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23673.1cds6994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7011 ID=rna7011|Name=rna7011|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp
ATGCTGCATCGCCGTGTACTGGCGTCTATACGAGCAAAAATATCTCACCG
ACGCCTCGAGGCGGAGAGTGGAGGAAGTGATGGCGGCCGCGCTCATCTAT
TGTCGCGTGGAATGGCAGTGATATTTACCGCAAGCAGTCTCCTCTTTGTC
GCGTGCCTCCTGCTGCCGGCAAAATTGCCGCATGGTAATTTAACCTTGAA
GCTCAAAGGCGGCAAACATGAATTCTCCTACTGCGAAGCCCCCATGGATG
GGGAGGATGGAATTCTTCCACCAGGCACGCGCACTAGGAAGCTTAAACAA
ATTCAGGTTGTGATTCGGCACGGAGATCGTTCGCCGATCACGAGTCTGAC
CTCGCCTTCCCCAGAATTCGATTGTAAATTGAAGGACCCAACCATGCGTC
GAGTGGCGCAGCTGGTACGGGAGAGGTTTAGCGTGGCGGGAGTCCAGGGC
AAAGCCTCTTTAGAGTACCTCACGCATGCCTTGCTTGCGCCGACCAGGGA
TCCGCCAGGGAAGGGACAGGATTTAGCTGCACTGCAAGGAGATGAGACCA
GAGCAGGACCTGAAACGGCTTTCTCGGGCGATGAAAGTCAAGCCTGCTTT
CCGGGCCAATTGACTGAGCGAGGCCTTCAGCAGCAGCTTCGGAATGGACA
GTACCTGCGAGATAGATATGGTACCGCCCTAGGCATCAAGGACATGGATA
AAGAGATCTACTTTCGCAGCACCAATTACCCGCGGACGTTTATTTCCGGG
GCAGTGCTGATGCTGAGCTTTCTGGCCCCGATAGTGCCCGAGCACATGCC
GGTGGTTGTTCAGGAGGAAAACAACAAGGAGGCACTTTTTGGACGAGGTT
TGATCGGCGCATCTCGACCCAGGAACATTGATCCCTTTCAGAGTGCACCT
GAGGAAAAAGGATCTTGTCGAGCTGCGTTTGCATTAGGGGCACAGCAGGA
GAAAGCCTTCAAAGTTGCGGCAGATTTAGACCGTGAATTGTTCGACCAGC
TTAAGCTGAGTCCAGCAGTAGAGGCAGAAGCGCGGAACTTGAGCGTGGCC
GACGCTACAGATCCTCTTATGGGCATGGCTTGCCACAGCCAAGAACTGCC
TGTTAAAAGGAGCCTCGTGCATCTCTTGAAGCAAGAGACTGACCGCATGT
TCTGTGAGCGTTTTGCCGGAGCCGAGGGCGGGCGGGAGGGCACCCGTTTG
GGTATGCAGCCTTTCCTTCGTGAAGTCCTTGGTCGCTTTCAGTCATATCA
AGACACGCGCTTGAAGCTGGCGCTTTATTCAGCGCATGACACAGTTTTGT
CCCCACTCCTGGGTGCCTTGGATGTGCTTGATAGGCACTGCTATTGGCCA
CCCTACGCGAGTCGGATCGTCTTTGAGCTTTGGGGGCCTCCCATCGCCAA
AGGAAACTCACTGAAGGCTGATACAAAGGCGGGTCACCTCCTTGGATCAA
AAGAGAGCGAGGAAAATGCCGTCCGTATCCTCTACAACGGCAACACCGTT
TCGCGACGGAGTTTGCATTGCCCAGAATACAGAGGTAAATATGAGGGAGG
ACAGGGAATGGAGGAGGAGATGCTGTTGCCCCTCGGTTGTTTGCAGGAGT
ACGTGGAGCGCATGTCACCTAGAGGAGGAAGCCAAGTTCCGTGTACATAA
back to top

protein sequence of rna7011

>rna7011-protein ID=rna7011-protein|Name=rna7011|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MTYDAIGTWIRYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYT
LISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCL
WKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFH
KQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLAL
RIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMD
YIFGTDKEFKEHLLRRKHVEMDVNGKKAQVRAKELLRINM
back to top

mRNA from alignment at CM002470.1:233052..233924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7011 ID=rna7011|Name=rna7011|organism=Nannochloropsis gaditana|type=mRNA|length=873bp|location=Sequence derived from alignment at CM002470.1:233052..233924+ (Nannochloropsis gaditana)
ATGACATACGATGCGATTGGGACATGGATTAGGTACTTGGCGGATCTACT
TTCACGTTCGGCGGTTGACCACGGGGAGCTTGTCACTTTCTTAGCCGCGG
GGACTCTCGTTCATGAAAGCATCTTTGTTACTGGCAATCTGTGCTACACG
CTCATCTCCTACGTTCCAATATGTCGACAACGATGGAAAATTCAAAAAGG
GGTGAACCCCTCTACGGAACTCACTCATAAGGCTGTACTTCATATTTATT
TGGGACGACTTTTCATCCAGCTTCCGGCAATCGTGGGCTACTTTTGCCTG
TGGAAGCATTGTGGCGGAAGTATGCACGCTTCGCTACCATCTGCAATGCA
ATGCACCTGGCAATTGCTAGTTTGCGCACTAGGGACAGAGTTTATGTTTT
ACTCGGCACATCGCATGTTCCACCATCCCTCTATTTACAAGTACTTCCAC
AAGCAGCACCATGAATTCAAATCGCCAATAGGTATCTCGTCAGAATACGC
CCACGTGCTTGAAGATTTAATCGTTAATTTGCCGTCGACTTTATTGCCTC
CAGTCATTCTAGGTGTGCACCCCCTAGTTCTATACCTGTGGCTCGCGCTT
CGCATTTGGGAGACAGTAGACGCACATTCAGGCCTTGCTCTGCCATGGTC
CCCTTACTATTTGTTGCCATGTTTTGCAGGTCCATTATTTCATGACTTCC
ATCATATGGCGACCACAAAGGGAGCATATGGTGTCTTAGGCCTTATGGAC
TATATATTCGGTACAGACAAAGAATTCAAGGAGCATCTATTGCGTCGAAA
GCATGTCGAGATGGACGTTAATGGTAAAAAAGCGCAGGTACGAGCCAAAG
AGCTGCTGAGAATAAACATGTAA
back to top

Coding sequence (CDS) from alignment at CM002470.1:233052..233924+

>rna7011 ID=rna7011|Name=rna7011|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at CM002470.1:233052..233924+ (Nannochloropsis gaditana)
ATGACATACGATGCGATTGGGACATGGATTAGGTACTTGGCGGATCTACT
TTCACGTTCGGCGGTTGACCACGGGGAGCTTGTCACTTTCTTAGCCGCGG
GGACTCTCGTTCATGAAAGCATCTTTGTTACTGGCAATCTGTGCTACACG
CTCATCTCCTACGTTCCAATATGTCGACAACGATGGAAAATTCAAAAAGG
GGTGAACCCCTCTACGGAACTCACTCATAAGGCTGTACTTCATATTTATT
TGGGACGACTTTTCATCCAGCTTCCGGCAATCGTGGGCTACTTTTGCCTG
TGGAAGCATTGTGGCGGAAGTATGCACGCTTCGCTACCATCTGCAATGCA
ATGCACCTGGCAATTGCTAGTTTGCGCACTAGGGACAGAGTTTATGTTTT
ACTCGGCACATCGCATGTTCCACCATCCCTCTATTTACAAGTACTTCCAC
AAGCAGCACCATGAATTCAAATCGCCAATAGGTATCTCGTCAGAATACGC
CCACGTGCTTGAAGATTTAATCGTTAATTTGCCGTCGACTTTATTGCCTC
CAGTCATTCTAGGTGTGCACCCCCTAGTTCTATACCTGTGGCTCGCGCTT
CGCATTTGGGAGACAGTAGACGCACATTCAGGCCTTGCTCTGCCATGGTC
CCCTTACTATTTGTTGCCATGTTTTGCAGGTCCATTATTTCATGACTTCC
ATCATATGGCGACCACAAAGGGAGCATATGGTGTCTTAGGCCTTATGGAC
TATATATTCGGTACAGACAAAGAATTCAAGGAGCATCTATTGCGTCGAAA
GCATGTCGAGATGGACGTTAATGGTAAAAAAGCGCAGGTACGAGCCAAAG
AGCTGCTGAGAATAAACATGTAA
back to top
Synonyms
Publications