EWM23673.1, cds6994 (CDS) Nannochloropsis gaditana

Overview
NameEWM23673.1
Unique Namecds6994
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:233052..233924 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23673.1
Productsterol 4-alpha-methyl-oxidase
Orig transcript idgnl|cribi|Naga_100030g32.4170.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:233052..233924 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006633fatty acid biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006694Fatty_acid_hydroxylase
Homology
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|585104827|gb|EWM23673.1| (sterol 4-alpha-methyl-oxidase [Nannochloropsis gaditana])

HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query:    1 MTYDAIGTWIRYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRKHVEMDVNGKKAQVRAKELLRINM 290
            MTYDAIGTWIRYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRKHVEMDVNGKKAQVRAKELLRINM
Sbjct:    1 MTYDAIGTWIRYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRKHVEMDVNGKKAQVRAKELLRINM 290          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|673019518|ref|XP_008863720.1| (hypothetical protein H310_02097 [Aphanomyces invadans] >gi|574480634|gb|ETW07627.1| hypothetical protein H310_02097 [Aphanomyces invadans])

HSP 1 Score: 160.999 bits (406), Expect = 6.213e-44
Identity = 88/234 (37.61%), Postives = 137/234 (58.55%), Query Frame = 0
Query:   36 LVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRKHV 269
            ++HE+++ T  + Y  + ++P  R ++KIQ+    +   T + V H+    + IQLP I+      +  G +    LP+A    WQ  V  +  +F FY  HR+ HH SIYKY HK HHE+ +P GI++EYAH +E +++ +  T L P++L  H L L++WLA+R++ET+D HSG  LPW+    LP +AGP+ HDFHH         V  + DY+FGTD  F++    R+ +
Sbjct:   54 VLHEALYFTIWVPYLALDFIPYFR-KYKIQENKPNTWNETWRCVKHLIFSHVVIQLPMILCSDWGLRQLGFTFDLPLPAATTIAWQCFVSFILEDFYFYWVHRLLHHKSIYKYVHKIHHEYAAPFGIAAEYAHPIETMLLGV-GTFLGPLLLTRHLLTLWVWLAVRLFETIDDHSGYELPWAWSNFLPFWAGPVHHDFHHEKFDGNYASVFTVWDYVFGTDGAFRQSQADRRAI 285          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|308804473|ref|XP_003079549.1| (C-4 sterol methyl oxidase (ISS) [Ostreococcus tauri])

HSP 1 Score: 160.229 bits (404), Expect = 1.297e-43
Identity = 84/205 (40.98%), Postives = 123/205 (60.00%), Query Frame = 0
Query:   60 QRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMH-ASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYG-VLGLMDYIFGTDKEFKEH 262
            Q+WKIQ+   PS E+  K V+ +    +F+QLP  + ++ +  + G S+   +LP +    WQ+ V  +  +F FY  HR  HH  +YKY HK HHE K P GI++EYAH +E   + +  TLL P+    H + L++WL  R+ ETV+ HSG  +PW+P  L+P + G + HDFHH  T +G Y  V    D++FGTDKEF+ H
Sbjct:   65 QKWKIQREKRPSAEMVMKCVVKLLKSHVFVQLPMQMMFYFVAPYFGFSLALEALPKSRDFLWQIPVFFVIEDFYFYWIHRFLHHKRVYKYVHKVHHEHKYPFGIAAEYAHPVETFFLGI-GTLLGPLFFAKHMVTLWVWLFFRLLETVEDHSGYDVPWNPTNLIPFWGGAVHHDFHH-KTFEGPYSSVFTWCDWMFGTDKEFRAH 267          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|698783369|ref|XP_009824728.1| (hypothetical protein H257_02682 [Aphanomyces astaci] >gi|574120778|gb|ETV86256.1| hypothetical protein H257_02682 [Aphanomyces astaci])

HSP 1 Score: 160.229 bits (404), Expect = 1.413e-43
Identity = 87/232 (37.50%), Postives = 136/232 (58.62%), Query Frame = 0
Query:   36 LVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKEHLLRRK 267
            ++HE+++ +  L Y  + +VP  R ++KIQ+    +   T +   H+    + +QLP I+      +  G +    LP+A    WQ LV  +  +F FY  HR+ HH S+YKY HK HHE+ +P GI++EYAH +E +++ +  T L P++L  H L L++WLA+R++ET+D HSG  LPW+    LP +AGP+ HDFHH         V  + DY+FGTD  F++    R+
Sbjct:   54 VLHEALYFSIWLPYLALDFVPYFR-KYKIQEAKPNTWAETWRCFKHLVFSHVVVQLPMILSSDWGLRQLGFTFELPLPTASTIAWQCLVSFILEDFYFYWVHRLMHHKSVYKYVHKVHHEYAAPFGIAAEYAHPIETMLLGV-GTFLGPLLLTRHLLTLWVWLAVRLFETIDDHSGYELPWAWSNFLPFWAGPVHHDFHHEKFDGNYASVFTVWDYVFGTDGAFRQSQADRR 283          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|693500082|emb|CEF98134.1| (Fatty acid hydroxylase [Ostreococcus tauri])

HSP 1 Score: 160.999 bits (406), Expect = 1.417e-43
Identity = 84/205 (40.98%), Postives = 123/205 (60.00%), Query Frame = 0
Query:   60 QRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMH-ASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYG-VLGLMDYIFGTDKEFKEH 262
            Q+WKIQ+   PS E+  K V+ +    +F+QLP  + ++ +  + G S+   +LP +    WQ+ V  +  +F FY  HR  HH  +YKY HK HHE K P GI++EYAH +E   + +  TLL P+    H + L++WL  R+ ETV+ HSG  +PW+P  L+P + G + HDFHH  T +G Y  V    D++FGTDKEF+ H
Sbjct:  108 QKWKIQREKRPSAEMVMKCVVKLLKSHVFVQLPMQMMFYFVAPYFGFSLALEALPKSRDFLWQIPVFFVIEDFYFYWIHRFLHHKRVYKYVHKVHHEHKYPFGIAAEYAHPVETFFLGI-GTLLGPLFFAKHMVTLWVWLFFRLLETVEDHSGYDVPWNPTNLIPFWGGAVHHDFHH-KTFEGPYSSVFTWCDWMFGTDKEFRAH 310          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|189026981|emb|CAQ55986.1| (sterol C4 methyloxydase, partial [Aphanomyces euteiches])

HSP 1 Score: 158.688 bits (400), Expect = 2.408e-43
Identity = 87/226 (38.50%), Postives = 133/226 (58.85%), Query Frame = 0
Query:   36 LVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKE 261
            ++HE+++ +  + Y L+ ++P  R ++KIQ+    + E T + + H+    +FIQ P I+G     +  G +    LP A    WQ  +  +  +F FY  HR+ HH S+YKY HKQHHEF +P GI++EYAH +E  ++ L  T L P++L  H L L++WLA+R+ ET+D HSG  LPW+    +P +AGP+ HDFHH         V  + D +F TD  F+E
Sbjct:   54 VLHEALYFSIWIPYLLLDFIPYFR-KYKIQQSKPNTWENTWRCLKHLLFNHVFIQFPMILGSDWGLRQLGFTTALPLPHATTIAWQCFMSFILEDFYFYWVHRIMHHKSLYKYVHKQHHEFAAPFGIAAEYAHPVETAVLGL-GTFLGPLLLTRHLLTLWVWLAVRLVETIDDHSGYDLPWAWSNFVPFWAGPVHHDFHHEKFDGNYASVFTIWDNVFWTDTAFRE 277          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|145347275|ref|XP_001418099.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144578327|gb|ABO96392.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 157.532 bits (397), Expect = 6.828e-43
Identity = 94/246 (38.21%), Postives = 137/246 (55.69%), Query Frame = 0
Query:   30 FLAAGTLV---HESIFV---TGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMH-ASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYG-VLGLMDYIFGTDKEFKEHLLRRK 267
            F+ AG L    HE+++    T  L      Y     +RWKIQ    PS E+  K +  +    +FIQLP  + ++ +  + G S+   +LP +    WQ+ V     +F FY  HR  HH  +YKY HK HHE K P GI++EYAH +E   + +  TLL P+    H + L++WL  R+ ETV+ HSG  +PW+P  L+P + G + HDFHH  T +G Y  V    D++FGTDKEF++H L+ +
Sbjct:   16 FVIAGPLTFAYHEAVYFGAWTPWLAMDQFEYF----KRWKIQPDKTPSKEMVMKCLTKLLKSHVFIQLPMQMMFYFVAPYFGFSLAMEALPKSRDLLWQIPVFFAIEDFYFYWVHRGLHHKRVYKYVHKIHHEHKFPFGIAAEYAHPVETFFLGI-GTLLGPLFFAKHMVTLWVWLFFRLVETVEDHSGYDVPWNPTNLIPFWGGAVHHDFHH-KTFEGPYSSVFTWCDWMFGTDKEFRKHQLKLR 255          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|1199292695|gb|OUS47781.1| (fatty acid hydroxylase superfamily-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 160.229 bits (404), Expect = 2.224e-42
Identity = 84/205 (40.98%), Postives = 123/205 (60.00%), Query Frame = 0
Query:   60 QRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMH-ASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYG-VLGLMDYIFGTDKEFKEH 262
            Q+WKIQ+   PS E+  K V+ +    +F+QLP  + ++ +  + G S+   +LP +    WQ+ V  +  +F FY  HR  HH  +YKY HK HHE K P GI++EYAH +E   + +  TLL P+    H + L++WL  R+ ETV+ HSG  +PW+P  L+P + G + HDFHH  T +G Y  V    D++FGTDKEF+ H
Sbjct:  196 QKWKIQREKRPSAEMVMKCVVKLLKSHVFVQLPMQMMFYFVAPYFGFSLALEALPKSRDFLWQIPVFFVIEDFYFYWIHRFLHHKRVYKYVHKVHHEHKYPFGIAAEYAHPVETFFLGI-GTLLGPLFFAKHMVTLWVWLFFRLLETVEDHSGYDVPWNPTNLIPFWGGAVHHDFHH-KTFEGPYSSVFTWCDWMFGTDKEFRAH 398          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|1111089598|ref|XP_019233626.1| (PREDICTED: methylsterol monooxygenase 2-2-like isoform X2 [Nicotiana attenuata] >gi|1102150526|gb|OIT06802.1| methylsterol monooxygenase 2-2 [Nicotiana attenuata])

HSP 1 Score: 154.836 bits (390), Expect = 4.746e-42
Identity = 89/248 (35.89%), Postives = 138/248 (55.65%), Query Frame = 0
Query:   33 AGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHH--MATTKGAY-GVLGLMDYIFGTDKEFKEHLLRRKHVEMDVNGKK 277
             G ++HES+F    L + L         ++KIQK  N S E   K +  + +  L + LP ++G + ++K  G      LPS    + Q++   +  +F+FY  HR+ H   +YK+ H  HHE+ +P G++SEYAH  E L +   +T++ P I G H + LYLW++LR+ ETV+AHSG   PWSP   LP + G  FHD+HH  + T  G Y      MD+IFGTDK +++    +++   +  GK+
Sbjct:   25 GGFVLHESVFFLSGLPFILFERAG-WFGKYKIQKK-NNSPEAQEKCITRLLMYHLCVNLPILLGSYPVFKFMGTRSSLPLPSWKVISTQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGF-ATIIGPAITGPHLITLYLWVSLRVLETVEAHSGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGYRKLKSLKENERFEAEGKE 269          
BLAST of EWM23673.1 vs. NCBI_GenBank
Match: gi|698783367|ref|XP_009824727.1| (hypothetical protein H257_02681 [Aphanomyces astaci] >gi|574120777|gb|ETV86255.1| hypothetical protein H257_02681 [Aphanomyces astaci])

HSP 1 Score: 155.992 bits (393), Expect = 1.069e-41
Identity = 90/251 (35.86%), Postives = 137/251 (54.58%), Query Frame = 0
Query:   11 RYLADLLSRSAVDHGELVTFLAAGTLVHESIFVTGNLCYTLISYVPICRQRWKIQKGVNPSTELTHKAVLHIYLGRLFIQLPAIVGYFCLWKHCGGSMHASLPSAMQCTWQLLVCALGTEFMFYSAHRMFHHPSIYKYFHKQHHEFKSPIGISSEYAHVLEDLIVNLPSTLLPPVILGVHPLVLYLWLALRIWETVDAHSGLALPWSPYYLLPCFAGPLFHDFHHMATTKGAYGVLGLMDYIFGTDKEFKE 261
            +Y+ D  S   ++ G  +TF      +H+  +    + Y L+ + PI   ++KIQ   + +   T+K +  +    +F+QLP +V      K  G  M A LPS     WQ+LV A+  +F  Y AHR+ H   IYKY HK HHE+ +P GI++EYAH  E LI+ +  T L P +L  H L L++W+ +R+ ++VD+H G  LPWSP   LP + G + HD+HH            + DY+FGTD  F++
Sbjct:   55 QYMLDNYSSFTINTG--LTFA-----LHQICYFGTWVPYLLLDFFPIF-HKYKIQPKQDNTWPGTYKCLKLLAFNHVFVQLPMMVSSDNSLKMLGFGMEAPLPSLTTIVWQVLVSAVLEDFYNYWAHRLLHWKRIYKYIHKVHHEYAAPFGITAEYAHPAETLILGI-GTFLGPFLLTRHLLTLWVWMCVRVIQSVDSHCGYELPWSPTRFLPFWGGAVHHDYHHEKFDVNYASFFTVWDYVFGTDGAFRD 296          
The following BLAST results are available for this feature:
BLAST of EWM23673.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104827|gb|EWM23673.1|0.000e+0100.00sterol 4-alpha-methyl-oxidase [Nannochloropsis gad... [more]
gi|673019518|ref|XP_008863720.1|6.213e-4437.61hypothetical protein H310_02097 [Aphanomyces invad... [more]
gi|308804473|ref|XP_003079549.1|1.297e-4340.98C-4 sterol methyl oxidase (ISS) [Ostreococcus taur... [more]
gi|698783369|ref|XP_009824728.1|1.413e-4337.50hypothetical protein H257_02682 [Aphanomyces astac... [more]
gi|693500082|emb|CEF98134.1|1.417e-4340.98Fatty acid hydroxylase [Ostreococcus tauri][more]
gi|189026981|emb|CAQ55986.1|2.408e-4338.50sterol C4 methyloxydase, partial [Aphanomyces eute... [more]
gi|145347275|ref|XP_001418099.1|6.828e-4338.21predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|1199292695|gb|OUS47781.1|2.224e-4240.98fatty acid hydroxylase superfamily-domain-containi... [more]
gi|1111089598|ref|XP_019233626.1|4.746e-4235.89PREDICTED: methylsterol monooxygenase 2-2-like iso... [more]
gi|698783367|ref|XP_009824727.1|1.069e-4135.86hypothetical protein H257_02681 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7011rna7011Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications