rna6996, rna6996 (mRNA) Nannochloropsis gaditana

Overview
Namerna6996
Unique Namerna6996
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1291
Alignment locationCM002470.1:205324..207186 +

Link to JBrowse

Properties
Property NameValue
Productprotein pelota
Orig transcript idgnl|cribi|Naga_100030g18.4173.mrna
Orig protein idgnl|cribi|Naga_100030g18.4173
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:205324..207186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g18gene6762Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6996rna6996-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23676.1cds6980Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6996 ID=rna6996|Name=rna6996|organism=Nannochloropsis gaditana|type=mRNA|length=1291bp
ATAACAGGCGGACAAGCACAGGCATTCAATATGCGAAGATCTGTCATCCT
GAACAGCTAAATAGAGGACAAGCAGGGAGCGGCAGGACAGGTCGTCCTAG
AGCACGCTCGCGCCAACAAAGTGCCTTAGAGCAGTCTCACGAAACCTATG
CCTTCTGGAAGCAAAAAACAACAAATACGTTACCAGCAGCAATATCAAGA
TGTAGTCATGGCCGAACAGCTGGACGATATCGTGCTTCGGCGTGGCCCAG
CTTCAACACCCGCCCTGCCAGACCGGCTGGTTCTCTCTTCTCTTGACTCT
CGACGCCTCAGAGTTAAGGCGGGTGACTGGCTCCTGATCAGTGGGTCGCA
GCCAGAGAAGGAATCGAGGGTGAACCAGGAAAATGAGGATTGTCCACGGC
GTGACAGCGGAGGTTTGCGACTGATGCTGCGGGCATGGCCGGGTAGCAAT
GTGCCGCAGGGGACGGCCGTGGGGGGGGGGCCGCTTCTGTCGGGCCAGTT
TTTTGGCAAGCGAAGGCAAGGGGAAGACGTCAATGTTTCGGTCCGCGCCT
TACCTGCGATGGCCAAGTGGCTCGCTGCATCGAAGGTAGTCCTGCGAGTC
GTTCCAGAAGGAGACGGAAGGGAATCAACGGGAGGAGGGGCCCGGGAGAC
GAGCAGGCGCGATACCCCCTCCCAGAGCAGCGTCGCCCCAGTCCTCTTCT
GGAAGGCGCGGCTTCATAGCGTGCTCGTGGGTCAGCTGGTCTTTCCGGGA
CTGCGATTGGCGTTCGCGTCCTTGGGCCAGGGCGTGAGCTTCGAGGTAGT
CGAGGTCCGGGCGGCGCGAGGGGAGATGGCCGGTGGGGCTGAAAGCATGC
CAGACCTTGCGACATTAACGCTCAAGGAGGTAACGGCCCCGCAAGAGCCG
CGTGTAGGCCTGGATCTGGAATCTGTGTGCGAGGTGCTGCCTGGAACGCG
CGTGGCGGTCGCGGGCCTTTTCCCCCATGGAAAGGCGGAGACGGCGACTG
GTTGGAGAGGTGAGCCCTCGGGGGCGAAGTGGGGGGAACGGCTTGTGGAG
GGAGGCTGGTGGGCCTCAGTGGGAGGGCTGGAGGCCGTGGTGGAAGAGCT
TCGTCAGGGCGTAGAACAGAGCTTGGACTCCCTCCACGTCTTTCTCGACC
GCGGGTTGCGGCCAGCGAGGGGCTTTCTGCTGGTGGGGCCCAGCGGGACG
GGCAAGACAACTCTCCTCAGGTAGGATGGGCTCGGCTTCCATGCGCGGAA
CCTGAAGACTCACTCCCTCTCCTTCGTTTCCCCGCTACTCC
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protein sequence of rna6996

>rna6996-protein ID=rna6996-protein|Name=rna6996|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MKLVSRDVSGKDGAGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVK
ESATGSTTSNKIRLNLTIQVQRMQFDPDTCVLRLSGPNREESEHVKMGAY
HTLDLELQRNFTIQKTCWDTVVLDRLDDACDPVKQAEVAAIVMQSGLANI
CLLTGSMTLVRQRIDMPIPKKRAGNVAHDKAIQKFYRAVYEAVTRHINFS
LVKAVLLASPGFVNSDFFAFLNSEAQLKEDKSLLQNKSKFVLCHSSSGHK
HALEEVLTQPGIQARLADTKAVGEVQALGDFFAMLSAQPDRAHYGFNHVQ
VAAEHDAVETLLMSDSIFRGRDFLARRRYVDLVEGVKAKGGRFLCFSSLH
VTGEKLHQLGGVAAILRFPLEIEMEEEDLPLEEAGGAGLGAGGVGGNGAA
TKVDHGAAAGQENLTGSEGGGKPEEGTEAEETAWAGGDVGVSDAEGMGL
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mRNA from alignment at CM002470.1:205324..207186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6996 ID=rna6996|Name=rna6996|organism=Nannochloropsis gaditana|type=mRNA|length=1863bp|location=Sequence derived from alignment at CM002470.1:205324..207186+ (Nannochloropsis gaditana)
GTAACACGTTCCTATCACACCATTTATGACTTCAATTTCTTGCTACAGCG
TGAAGAAGGGGGACATACTCTTTGATAGCACGCTCGCATGAAGCTCGTGA
GTCGAGATGTAAgcgggaaggatggagcgggAACCGTCGTGCTGCGGCCT
GAGGAGCCCGAGGACATGTGGGCCATCTACAACCTCATAAGTGAAGGAGA
CCTCGTtcgcaccaccaccttccgcAAAGTAGTCAAAGAAAGCGCCACAG
GATCAACGACAAGCAATAAAATTCGCCTGAACCTGACCATTCAGGTGCAG
CGGATGCAATTCGACCCAGACACCTGCGTTTTGCGTCTGAGTGGCCCTAA
TCGGGAAGAGTCCGAGCACGTGAAGGTGAGTaggtccttgccctctctgg
ATCGAGCATCGTCTCACTCCGGCCTTTTTTGGCCAAACAGATGGGAGCCT
ATCACACCTTGGATCTAGAGCTACAACGGAATTTTACCATTCAAAAGACG
TGCTGGGACACAGTGGTTCTGGACCGCCTGGACGATGCCTGCGACCCGGT
CAAGCAAGCTGAGGTTGCGGCCATCGTCATGCAGTCAGGCTTGGCGAATA
TCTGCCTCCTGACAGGATCCATGACTCTCGTCAGGCAGCGAATAGATGTA
AGTCCCTGTGTGCGAGGCTCTGACCCCTTGGCCGGTACCCAGCCCCTACA
TGCTTTGTACCAATGACTCGCCCCCCGGCTGCTTGGCCCGAAGGTGCATG
CTTGTTCTATTTATATCCTGACACGCTTGCACAAAGTTCGGTAAGCCTGT
GCTGGTCCGAACACCGGCAAGAGTGGATTCTCAGAAGCCTCCAAATCAgt
cgcctctccttcctttcctcgcaTCGCAGATGCCAATTCCGAAAAAGCGG
GCAGGGAATGTTGCTCACGATAAGGCCATCCAAAAATTTTACCGCGCCGT
CTACGAGGCAGTAACGCGACACATCAATTTTAGTCTGGTCAAAGCCGTCC
TGCTCGCCAGTCCCGGCTTCGTGAACTCGGACTTCTTCGCCTTTCTCAAC
AGCGAGGCGCAGCTCAAGGAGGATAAGTCCTTGCTGCAGAATAAATCCAA
GTTTGTGCTCTGCCACTCCTCCTCGGGCCACAAGCacgcgctggaggagg
tattGACCCAACCCGGGATCCAGGCGCGTCTCGCGGACACGAAAGCCGTG
GGCGAGGTGCAGGCGCTGGGGGACTTCTTCGCCATGCTCTCCGCGCAGCC
AGACCGCGCGCACTACGGTTTCAACCACGTGCAGGTGGCGGCCGAACACG
ATGCCGTGGAGACGCTGCTGATGAGCGATTCAATCTTCCGGGGTCGCGAC
TTTTTGGCGCGACGTCGGTACGtggacctggtggagggcgtcAAGGCCAA
GGGTGGTCGCTTTCTTTGCTTCTCCAGCCTGCACGTGACCGGCGAAAAGC
TGCACCAGCTCGGGGGCGTGGCGGCAATTCTCCGCTTTCCGCTAGAGAtt
gagatggaggaggaggacctgcccctggaggaggcgggcggggccgggct
GGGGGCAGGCGGTGTAGGAGGCAACGGTGCCGCTACCAAAGTTGACCATG
GTGCTGCGGCGGGACAAGAGAACTTGACGGGGtcagagggcggaggaaaa
cCTGAGGAGGGGACCGAGGCCGAAGAGACGGcatgggcgggaggggatgT
AGGGGTGAGCGACGCCGAAGGCATGGGGTTGTGACAGTAGCCgggccaag
gaagaaaattgaGCCCAGTCAAATTCCATTTATTGTGAGTAGCCAAGAAT
AGATTTCCCTTCCCATAGGAAGTAACTGCACAAAGCAAGTAAGCAACGAG
TTcatctctcttc
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Coding sequence (CDS) from alignment at CM002470.1:205324..207186+

>rna6996 ID=rna6996|Name=rna6996|organism=Nannochloropsis gaditana|type=CDS|length=4050bp|location=Sequence derived from alignment at CM002470.1:205324..207186+ (Nannochloropsis gaditana)
ATGAAGCTCGTGAGTCGAGATGTAAgcgggaaggatggagcgggAACCGT
CGTGCTGCGGCCTGAGGAGCCCGAGGACATGTGGGCCATCTACAACCTCA
TAAGTGAAGGAGACCTCGTtcgcaccaccaccttccgcAAAGTAGTCAAA
GAAAGCGCCACAGGATCAACGACAAGCAATAAAATTCGCCTGAACCTGAC
CATTCAGGTGCAGCGGATGCAATTCGACCCAGACACCTGCGTTTTGCGTC
TGAGTGGCCCTAATCGGGAAGAGTCCGAGCACGTGAAGATGGGAGCCTAT
CACACCTTGGATCTAGAGCTACAACGGAATTTTACCATTCAAAAGACGTG
CTGGGACACAGTGGTTCTGGACCGCCTGGACGATGCCTGCGACCCGGTCA
AGCAAGCTGAGGTTGCGGCCATCGTCATGCAGTCAGGCTTGGCGAATATC
TGCCTCCTGACAGGATCCATGACTCTCGTCAGGCAGCGAATAGATATGCC
AATTCCGAAAAAGCGGGCAGGGAATGTTGCTCACGATAAGGCCATCCAAA
AATTTTACCGCGCCGTCTACGAGGCAGTAACGCGACACATCAATTTTAGT
CTGGTCAAAGCCGTCCTGCTCGCCAGTCCCGGCTTCGTGAACTCGGACTT
CTTCGCCTTTCTCAACAGCGAGGCGCAGCTCAAGGAGGATAAGTCCTTGC
TGCAGAATAAATCCAAGTTTGTGCTCTGCCACTCCTCCTCGGGCCACAAG
CacgcgctggaggaggtattGACCCAACCCGGGATCCAGGCGCGTCTCGC
GGACACGAAAGCCGTGGGCGAGGTGCAGGCGCTGGGGGACTTCTTCGCCA
TGCTCTCCGCGCAGCCAGACCGCGCGCACTACGGTTTCAACCACGTGCAG
GTGGCGGCCGAACACGATGCCGTGGAGACGCTGCTGATGAGCGATTCAAT
CTTCCGGGGTCGCGACTTTTTGGCGCGACGTCGGTACGtggacctggtgg
agggcgtcAAGGCCAAGGGTGGTCGCTTTCTTTGCTTCTCCAGCCTGCAC
GTGACCGGCGAAAAGCTGCACCAGCTCGGGGGCGTGGCGGCAATTCTCCG
CTTTCCGCTAGAGAttgagatggaggaggaggacctgcccctggaggagg
cgggcggggccgggctGGGGGCAGGCGGTGTAGGAGGCAACGGTGCCGCT
ACCAAAGTTGACCATGGTGCTGCGGCGGGACAAGAGAACTTGACGGGGtc
agagggcggaggaaaacCTGAGGAGGGGACCGAGGCCGAAGAGACGGcat
gggcgggaggggatgTAGGGGTGAGCGACGCCGAAGGCATGGGGTTGTGA
ATGAAGCTCGTGAGTCGAGATGTAAgcgggaaggatggagcgggAACCGT
CGTGCTGCGGCCTGAGGAGCCCGAGGACATGTGGGCCATCTACAACCTCA
TAAGTGAAGGAGACCTCGTtcgcaccaccaccttccgcAAAGTAGTCAAA
GAAAGCGCCACAGGATCAACGACAAGCAATAAAATTCGCCTGAACCTGAC
CATTCAGGTGCAGCGGATGCAATTCGACCCAGACACCTGCGTTTTGCGTC
TGAGTGGCCCTAATCGGGAAGAGTCCGAGCACGTGAAGATGGGAGCCTAT
CACACCTTGGATCTAGAGCTACAACGGAATTTTACCATTCAAAAGACGTG
CTGGGACACAGTGGTTCTGGACCGCCTGGACGATGCCTGCGACCCGGTCA
AGCAAGCTGAGGTTGCGGCCATCGTCATGCAGTCAGGCTTGGCGAATATC
TGCCTCCTGACAGGATCCATGACTCTCGTCAGGCAGCGAATAGATATGCC
AATTCCGAAAAAGCGGGCAGGGAATGTTGCTCACGATAAGGCCATCCAAA
AATTTTACCGCGCCGTCTACGAGGCAGTAACGCGACACATCAATTTTAGT
CTGGTCAAAGCCGTCCTGCTCGCCAGTCCCGGCTTCGTGAACTCGGACTT
CTTCGCCTTTCTCAACAGCGAGGCGCAGCTCAAGGAGGATAAGTCCTTGC
TGCAGAATAAATCCAAGTTTGTGCTCTGCCACTCCTCCTCGGGCCACAAG
CacgcgctggaggaggtattGACCCAACCCGGGATCCAGGCGCGTCTCGC
GGACACGAAAGCCGTGGGCGAGGTGCAGGCGCTGGGGGACTTCTTCGCCA
TGCTCTCCGCGCAGCCAGACCGCGCGCACTACGGTTTCAACCACGTGCAG
GTGGCGGCCGAACACGATGCCGTGGAGACGCTGCTGATGAGCGATTCAAT
CTTCCGGGGTCGCGACTTTTTGGCGCGACGTCGGTACGtggacctggtgg
agggcgtcAAGGCCAAGGGTGGTCGCTTTCTTTGCTTCTCCAGCCTGCAC
GTGACCGGCGAAAAGCTGCACCAGCTCGGGGGCGTGGCGGCAATTCTCCG
CTTTCCGCTAGAGAttgagatggaggaggaggacctgcccctggaggagg
cgggcggggccgggctGGGGGCAGGCGGTGTAGGAGGCAACGGTGCCGCT
ACCAAAGTTGACCATGGTGCTGCGGCGGGACAAGAGAACTTGACGGGGtc
agagggcggaggaaaacCTGAGGAGGGGACCGAGGCCGAAGAGACGGcat
gggcgggaggggatgTAGGGGTGAGCGACGCCGAAGGCATGGGGTTGTGA
ATGAAGCTCGTGAGTCGAGATGTAAgcgggaaggatggagcgggAACCGT
CGTGCTGCGGCCTGAGGAGCCCGAGGACATGTGGGCCATCTACAACCTCA
TAAGTGAAGGAGACCTCGTtcgcaccaccaccttccgcAAAGTAGTCAAA
GAAAGCGCCACAGGATCAACGACAAGCAATAAAATTCGCCTGAACCTGAC
CATTCAGGTGCAGCGGATGCAATTCGACCCAGACACCTGCGTTTTGCGTC
TGAGTGGCCCTAATCGGGAAGAGTCCGAGCACGTGAAGATGGGAGCCTAT
CACACCTTGGATCTAGAGCTACAACGGAATTTTACCATTCAAAAGACGTG
CTGGGACACAGTGGTTCTGGACCGCCTGGACGATGCCTGCGACCCGGTCA
AGCAAGCTGAGGTTGCGGCCATCGTCATGCAGTCAGGCTTGGCGAATATC
TGCCTCCTGACAGGATCCATGACTCTCGTCAGGCAGCGAATAGATATGCC
AATTCCGAAAAAGCGGGCAGGGAATGTTGCTCACGATAAGGCCATCCAAA
AATTTTACCGCGCCGTCTACGAGGCAGTAACGCGACACATCAATTTTAGT
CTGGTCAAAGCCGTCCTGCTCGCCAGTCCCGGCTTCGTGAACTCGGACTT
CTTCGCCTTTCTCAACAGCGAGGCGCAGCTCAAGGAGGATAAGTCCTTGC
TGCAGAATAAATCCAAGTTTGTGCTCTGCCACTCCTCCTCGGGCCACAAG
CacgcgctggaggaggtattGACCCAACCCGGGATCCAGGCGCGTCTCGC
GGACACGAAAGCCGTGGGCGAGGTGCAGGCGCTGGGGGACTTCTTCGCCA
TGCTCTCCGCGCAGCCAGACCGCGCGCACTACGGTTTCAACCACGTGCAG
GTGGCGGCCGAACACGATGCCGTGGAGACGCTGCTGATGAGCGATTCAAT
CTTCCGGGGTCGCGACTTTTTGGCGCGACGTCGGTACGtggacctggtgg
agggcgtcAAGGCCAAGGGTGGTCGCTTTCTTTGCTTCTCCAGCCTGCAC
GTGACCGGCGAAAAGCTGCACCAGCTCGGGGGCGTGGCGGCAATTCTCCG
CTTTCCGCTAGAGAttgagatggaggaggaggacctgcccctggaggagg
cgggcggggccgggctGGGGGCAGGCGGTGTAGGAGGCAACGGTGCCGCT
ACCAAAGTTGACCATGGTGCTGCGGCGGGACAAGAGAACTTGACGGGGtc
agagggcggaggaaaacCTGAGGAGGGGACCGAGGCCGAAGAGACGGcat
gggcgggaggggatgTAGGGGTGAGCGACGCCGAAGGCATGGGGTTGTGA
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Synonyms
Publications