rna6958, rna6958 (mRNA) Nannochloropsis gaditana

Overview
Namerna6958
Unique Namerna6958
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationCM002470.1:104199..106093 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100734g2.9483.mrna
Orig protein idgnl|cribi|Naga_100734g2.9483
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:104199..106093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100734g2gene6724Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6958rna6958-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23731.1cds6942Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6958 ID=rna6958|Name=rna6958|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGGGAAGAGAGCGGGGGGGAGGGCGGGGGAGAGGGCGGGGCGGAAGGCG
GGAGGGAGGGCGAGGAGGACACGGTGTCGTCCTTGGCGTTCATGGATATG
CCCTCGTGGGAAGAACTGGATCGGTATTTGTACGAAGGGGAGGAGGCGTG
AGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GACTCTGTTTATGTTTGAAGACTTGGTTCAAGAAGGAAGGAAAGGCGACG
GCGAAACGCCCCCCTCTGGTCAGGACCAGCCAATTCCGATGAAATGA
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protein sequence of rna6958

>rna6958-protein ID=rna6958-protein|Name=rna6958|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MPIPLMYGCWAMSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEEN
LEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVT
GYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDL
ITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSK
LVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN
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mRNA from alignment at CM002470.1:104199..106093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6958 ID=rna6958|Name=rna6958|organism=Nannochloropsis gaditana|type=mRNA|length=1895bp|location=Sequence derived from alignment at CM002470.1:104199..106093+ (Nannochloropsis gaditana)
AAACGACAAAGAAGAGACGGCGTCACTTTCAATCCCCATTTTTATTCTTA
CGCATGAATTAAATGATCAATACTGTGGTCGATGCCACGAAAAAATGTTT
TTAAAATTCCGGAAAGAAGTTCATATACCGcctttaacctccccgtcgtc
TTTTGTATCTCACCATAACCATGCAGTGTCTACGGTAATTTCCATTGAAA
TCTTCTTGAATTCTTGGGATAAAGGCGGAAACCCCTGTCTGACGCAACAA
TGACGCCGGGTCGAGTGTAGCTTGCACAGTGTGGGAATTGCAAGGTTGAA
AAGGCTTGTGCTGGGAGTCTATTCTCAAAACCAAGTAACATTcctgtttt
ccctccctgcctcacACCCCTCAAATGAACGTCCTATTCTTGTCACCATG
CCCATACCATTGATGTATGGCTGTTGGGTACGTGGGAACTAATACCACGT
GTCTGGTGGCATGCGTGTGCCTTGTATTGGTTGGAAAGTCTCCAATCTCC
CGCATCGCAAGAGGTGATGTCTTATCCCACGTCGATTTTTTCCTCACCCC
TCAAAACTCCTTCTATCATTGCCCCACCTGCCTACCACTAGGCCATGTCG
GAATCGTATCGAAGAGCAGTAGGAGGACGCCTCAAGAtcggtgggaaaga
ggtggaTGTGTAAGTAAAGAGTGGGGGGATGTGGGGTggggcaagggcgg
gagctGACATGGGTGAGACGTCGCAGACATCATGGTATGGCGGTCAGCAC
GCGACACAAGAATGAGACAGTCCTGTTCATTTTGTGAATCATGGCGAAGG
TCCCGGTGCTCATTtttcaaggggaagagggaggccgtcgCCGATGCATT
GAACATCAAGTCGCAAGCACGAGTCTTCCTTCTGCCTCTGATTATATCTG
TCCTCGAGTACCCGCACAGTGCATGTCTCAATTCTTCCGTGACATAAGAG
AGCGTTAGCTAGCCCTGTACTGCATCTTACatgttccttttcctctcagT
GCATGTCGTGACATAAGAGAGCGTTAGCTAGCCCTGTACTGCATCTTACa
tgttccttttcctctcctcccttcttgggggttctccctccttctccaat
gtgctccgtctttccctcccttccccttccaagctcgaggaagaagaaag
ggaaaaaaaagcgcCTCCGCACCGAGGAAGAAAATCTTGAGGCCGATCCA
GACCCGCGTCGGGTCTTGAAGCAttcgaaggaggaagggaacgacGGCGG
TAGcggtgcggaggagggagagacccCCCTGCTGCAGGCTAAGGCAGGAA
GCGGGCGAATCACGAGCAGTGGCCAAGTTGTCACAGGGTACGAGACCGAA
TTCTTGCAAGAATTACGGGTGAACGACGCCTTGATCATCACGCACCCGAG
CAcgttgatggaggagacgcggATCGTGAAAATGATCGTCAGCAACAAGg
ggctttccctctcttcccccttctcgaGCGACTTGatcaccaccacccgg
tTCCGCTACATCCATCCgccggaagaagacgaagaaggggggagagaagc
ccgggaggaggagcgacggcggcaggagaaggcgggggaggaggagaaag
cttTTGGGACGTatgggggcgcgggggggtCGAAATTGGTATATAGGGTG
AAGAAAACAGGGACGTACGGAGGGTATCGGATCGTCACGGAGGATACGGG
GGCGAGCCTCTCAAGGACGGAGCTTTTGGAGAGGCGGCTGCAGCATAAGA
GTGACCGGCACGCGAATTGAGAGCAGGGAAAAGGTTGGATAGGAAGTACA
AATAAAAGGAGCCGTACTGCGAATGAAAAGCATGCAAAAGTTTGGATGGG
AAGTACGAATGAAAGAGGATCACCCAAGGAGAATTGCTTTCCAGG
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Coding sequence (CDS) from alignment at CM002470.1:104199..106093+

>rna6958 ID=rna6958|Name=rna6958|organism=Nannochloropsis gaditana|type=CDS|length=2205bp|location=Sequence derived from alignment at CM002470.1:104199..106093+ (Nannochloropsis gaditana)
ATGCCCATACCATTGATGTATGGCTGTTGGGCCATGTCGGAATCGTATCG
AAGAGCAGTAGGAGGACGCCTCAAGAtcggtgggaaagaggtggaTGTct
cgaggaagaagaaagggaaaaaaaagcgcCTCCGCACCGAGGAAGAAAAT
CTTGAGGCCGATCCAGACCCGCGTCGGGTCTTGAAGCAttcgaaggagga
agggaacgacGGCGGTAGcggtgcggaggagggagagacccCCCTGCTGC
AGGCTAAGGCAGGAAGCGGGCGAATCACGAGCAGTGGCCAAGTTGTCACA
GGGTACGAGACCGAATTCTTGCAAGAATTACGGGTGAACGACGCCTTGAT
CATCACGCACCCGAGCAcgttgatggaggagacgcggATCGTGAAAATGA
TCGTCAGCAACAAGgggctttccctctcttcccccttctcgaGCGACTTG
atcaccaccacccggtTCCGCTACATCCATCCgccggaagaagacgaaga
aggggggagagaagcccgggaggaggagcgacggcggcaggagaaggcgg
gggaggaggagaaagcttTTGGGACGTatgggggcgcgggggggtCGAAA
TTGGTATATAGGGTGAAGAAAACAGGGACGTACGGAGGGTATCGGATCGT
CACGGAGGATACGGGGGCGAGCCTCTCAAGGACGGAGCTTTTGGAGAGGC
GGCTGCAGCATAAGAGTGACCGGCACGCGAATTGAATGCCCATACCATTG
ATGTATGGCTGTTGGGCCATGTCGGAATCGTATCGAAGAGCAGTAGGAGG
ACGCCTCAAGAtcggtgggaaagaggtggaTGTctcgaggaagaagaaag
ggaaaaaaaagcgcCTCCGCACCGAGGAAGAAAATCTTGAGGCCGATCCA
GACCCGCGTCGGGTCTTGAAGCAttcgaaggaggaagggaacgacGGCGG
TAGcggtgcggaggagggagagacccCCCTGCTGCAGGCTAAGGCAGGAA
GCGGGCGAATCACGAGCAGTGGCCAAGTTGTCACAGGGTACGAGACCGAA
TTCTTGCAAGAATTACGGGTGAACGACGCCTTGATCATCACGCACCCGAG
CAcgttgatggaggagacgcggATCGTGAAAATGATCGTCAGCAACAAGg
ggctttccctctcttcccccttctcgaGCGACTTGatcaccaccacccgg
tTCCGCTACATCCATCCgccggaagaagacgaagaaggggggagagaagc
ccgggaggaggagcgacggcggcaggagaaggcgggggaggaggagaaag
cttTTGGGACGTatgggggcgcgggggggtCGAAATTGGTATATAGGGTG
AAGAAAACAGGGACGTACGGAGGGTATCGGATCGTCACGGAGGATACGGG
GGCGAGCCTCTCAAGGACGGAGCTTTTGGAGAGGCGGCTGCAGCATAAGA
GTGACCGGCACGCGAATTGAATGCCCATACCATTGATGTATGGCTGTTGG
GCCATGTCGGAATCGTATCGAAGAGCAGTAGGAGGACGCCTCAAGAtcgg
tgggaaagaggtggaTGTctcgaggaagaagaaagggaaaaaaaagcgcC
TCCGCACCGAGGAAGAAAATCTTGAGGCCGATCCAGACCCGCGTCGGGTC
TTGAAGCAttcgaaggaggaagggaacgacGGCGGTAGcggtgcggagga
gggagagacccCCCTGCTGCAGGCTAAGGCAGGAAGCGGGCGAATCACGA
GCAGTGGCCAAGTTGTCACAGGGTACGAGACCGAATTCTTGCAAGAATTA
CGGGTGAACGACGCCTTGATCATCACGCACCCGAGCAcgttgatggagga
gacgcggATCGTGAAAATGATCGTCAGCAACAAGgggctttccctctctt
cccccttctcgaGCGACTTGatcaccaccacccggtTCCGCTACATCCAT
CCgccggaagaagacgaagaaggggggagagaagcccgggaggaggagcg
acggcggcaggagaaggcgggggaggaggagaaagcttTTGGGACGTatg
ggggcgcgggggggtCGAAATTGGTATATAGGGTGAAGAAAACAGGGACG
TACGGAGGGTATCGGATCGTCACGGAGGATACGGGGGCGAGCCTCTCAAG
GACGGAGCTTTTGGAGAGGCGGCTGCAGCATAAGAGTGACCGGCACGCGA
ATTGA
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Synonyms
Publications