EWM23731.1, cds6942 (CDS) Nannochloropsis gaditana

Overview
NameEWM23731.1
Unique Namecds6942
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:104596..104625 +
Alignment locationCM002470.1:104790..104857 +
Alignment locationCM002470.1:105332..105968 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23731.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100734g2.9483.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:104596..104625 +
CM002470.1supercontigCM002470.1:104790..104857 +
CM002470.1supercontigCM002470.1:105332..105968 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|585104902|gb|EWM23731.1| (hypothetical protein Naga_100734g2 [Nannochloropsis gaditana])

HSP 1 Score: 491.886 bits (1265), Expect = 9.661e-176
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MPIPLMYGCWAMSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            MPIPLMYGCWAMSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN
Sbjct:    1 MPIPLMYGCWAMSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|553177162|ref|XP_005852439.1| (Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526] >gi|422296094|gb|EKU23393.1| Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 414.075 bits (1063), Expect = 2.800e-145
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0
Query:   34 SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGN+GGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKK GTYGGYRIVTED GASLSRTELLERRLQHKSDRHAN
Sbjct:   13 SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNEGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKAGTYGGYRIVTEDMGASLSRTELLERRLQHKSDRHAN 223          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|553193197|ref|XP_005855730.1| (Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526] >gi|422293332|gb|EKU20632.1| Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.553 bits (828), Expect = 4.915e-103
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0
Query:   34 SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGA 196
            SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGN+GGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGA
Sbjct:   13 SRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNEGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGA 175          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|325187773|emb|CCA22318.1| (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 152.525 bits (384), Expect = 3.914e-42
Identity = 101/245 (41.22%), Postives = 146/245 (59.59%), Query Frame = 0
Query:   12 MSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEAD----------PDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTG-YETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAG--GSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHA 243
            M+  Y + VGG+L++ G   +V+     K +RL  +  N   D              RV   SK E N+  +     E  L + K G+GRI SSG  + G   T+FLQEL V DA+II HP++LMEETRI++M++S+   SLSSPFS+DLI++T F YI  P++++E  +E     ++R  K+ +E+ AFGTY G    G++L YRVKK+G YGGY+++ E   A  +R ELL+ R + K DRH 
Sbjct:    1 MASPYAKTVGGKLRLKG---NVAILYIYKHERLE-QPLNFVCDLYRSKKRKRTRKSERV--ESKVEDNNPQTDQPTAEDVLTKCK-GTGRILSSGTTLMGQIGTKFLQELSVGDAIIIQHPTSLMEETRILRMVLSDVSASLSSPFSTDLISSTSFSYIKAPKDEDE--QENASTLKKRILKS-DEKNAFGTYAGGTEMGTELTYRVKKSGVYGGYQLIREKASAVRTREELLDFREKKKGDRHC 235          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|635366424|emb|CCI45275.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 154.066 bits (388), Expect = 5.434e-39
Identity = 95/235 (40.43%), Postives = 144/235 (61.28%), Query Frame = 0
Query:   11 AMSESYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTG-YETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAG--GSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRH 242
             M+  Y + VGG+L++ G    +S+K+K  +K  + E +    + D  ++ + S E+              LL    G+GRI SSG  + G   T+FLQEL V DA+II HP++L+EETRI++M++S+   SLSSPFS+DLI++T F YI+ P++D+E   +  E   +++    +E+ AFGTY G    G++L YRVKK+G YGGY+I+ E   A  +R ELL+ R + K DRH
Sbjct: 1394 GMTSPYAKTVGGKLRLKGNATALSKKRKRSRKSEQVEPK---LEDDNSQIDQPSAED--------------LLTKCKGTGRILSSGTTLMGQIGTKFLQELSVGDAIIIQHPTSLVEETRILRMVLSDVSASLSSPFSTDLISSTAFHYINAPKDDDE---QENESTLKKRILKSDEKNAFGTYAGGTEMGTELTYRVKKSGVYGGYQIIREKASAVRTREELLDFREKKKGDRH 1608          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|673024626|ref|XP_008866274.1| (hypothetical protein H310_03960 [Aphanomyces invadans] >gi|574477840|gb|ETW04836.1| hypothetical protein H310_03960 [Aphanomyces invadans])

HSP 1 Score: 142.124 bits (357), Expect = 2.467e-38
Identity = 104/234 (44.44%), Postives = 142/234 (60.68%), Query Frame = 0
Query:   15 SYRRAVGGRLKIGGKEVDVSRKKKGKKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTG-YETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIH-PPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGG--AGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            +Y +AVGG+L++ G  +D+S KKK  KK+ R  E N  A  D                   +E +  L++ + G+GRI +SG  V G   T+F  EL + DALII HP++L EETRIVKM++S+  +S+SSPFSSDL++TT F YI  PPEE ++   E+    ++R +K  EE  AFGTY G    G++  YRVKK G YGGY I+ E   A+ SR ELL+ R + K DRH N
Sbjct:    3 AYTKAVGGKLQLKGG-IDLSLKKKKTKKKTRKAETNASARSD-------------------DEDDFQLIKLQ-GTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVES----KKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|298710166|emb|CBJ31876.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.354 bits (355), Expect = 6.061e-38
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 0
Query:   87 AGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            +G+GRITSSG  V G+E +F+ EL   DA++ITHP+TL EETRI+KM++SN  +S+SSPFSSDLI+TT FRYI  P    E   E + EER+++ K  EE+ AFGTY GAGG +LVYR +     G YRI+      +++R E+L+ R   K+DRH N
Sbjct:   70 SGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPR--LEVSAETKAEERKKR-KVQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|813168880|ref|XP_012203922.1| (hypothetical protein SPRG_20758 [Saprolegnia parasitica CBS 223.65] >gi|641531415|gb|KDO25491.1| hypothetical protein SPRG_20758 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 136.732 bits (343), Expect = 2.464e-36
Identity = 85/185 (45.95%), Postives = 122/185 (65.95%), Query Frame = 0
Query:   64 SKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTG-YETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIH-PPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGG--AGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            + +  ++ G+ A+  +  L++ + G+GRI +SG  V G   T F  EL V DA++I HP++L EETRIVKM++S+  +S+SS FSSDL++TT F YI  PP+EDE    + ++E  +++ K+ EE  AFGTY G    GS+  YRVKK+G YGGY I+ E   A+ SR ELL+ R + K DRH N
Sbjct:   35 TAQSNDEDGADADRDDFQLVKLQ-GTGRILTSGTTVMGKMGTRFASELSVGDAMMIMHPTSLQEETRIVKMVLSDVSVSISSAFSSDLVSTTTFHYIKAPPDEDE----KEQKERAKKKSKSDEEGFAFGTYAGGTTAGSEYTYRVKKSGVYGGYAIMKETADANRSREELLDLRAKKKGDRHCN 214          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|1173929339|gb|OQR82582.1| (Niemann-Pick C1 protein [Achlya hypogyna])

HSP 1 Score: 136.732 bits (343), Expect = 2.954e-36
Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 0
Query:   69 NDGGSGAEEGETPLLQAKAGSGRITSSGQVVTG-YETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGG--AGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
            +D  S  +  E   L    G+GRI +SG  V G   T F  EL V DA+II HP++L EETRIV+M++S+  +S+SS FSSDL++TT F YI  P ++EE   +A++E   +++K  EE  AFGTY G    GS+L YRVKK+G YGGY I+ E    S SR ELL+ R + K DRH N
Sbjct:   37 SDEASAPDHHEDFELVKVQGTGRILTSGTTVMGKMGTRFASELSVGDAMIIVHPTSLQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAPPDEEE---KAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHCN 212          
BLAST of EWM23731.1 vs. NCBI_GenBank
Match: gi|1032149276|gb|OAO13300.1| (hypothetical protein AV274_4975 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 135.576 bits (340), Expect = 8.279e-36
Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 0
Query:   66 EEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHA 243
            EEG       EE +T    ++ G+GRI ++G VV G  T+FL+EL + D + I HPST   E R+VKMI S+  LS+SSPFS D  T   F Y    ++ E+    A  +E++ +E+  EE  AFG Y GAGG++  Y+ +    YGG++ +T+ T   L+R E+L+ R+++KSDRH 
Sbjct:   35 EEGALSYIPVEELQTVPTNSETGTGRIYATGSVVYGRGTKFLKELSIGDLISIQHPSTFEIENRVVKMIASDTSLSISSPFSQDFSTEICFEYC---KKQEDVLSPAELKEKQEKERNAEENAAFGIYQGAGGTEFTYKTRLNSAYGGWKTITKKTKRVLTREEMLDMRVKNKSDRHC 209          
The following BLAST results are available for this feature:
BLAST of EWM23731.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104902|gb|EWM23731.1|9.661e-176100.00hypothetical protein Naga_100734g2 [Nannochloropsi... [more]
gi|553177162|ref|XP_005852439.1|2.800e-14598.58Niemann-Pick C1 protein [Nannochloropsis gaditana ... [more]
gi|553193197|ref|XP_005855730.1|4.915e-10399.39Niemann-Pick C1 protein [Nannochloropsis gaditana ... [more]
gi|325187773|emb|CCA22318.1|3.914e-4241.22conserved unknown protein putative [Albugo laibach... [more]
gi|635366424|emb|CCI45275.1|5.434e-3940.43unnamed protein product [Albugo candida][more]
gi|673024626|ref|XP_008866274.1|2.467e-3844.44hypothetical protein H310_03960 [Aphanomyces invad... [more]
gi|298710166|emb|CBJ31876.1|6.061e-3851.90conserved unknown protein [Ectocarpus siliculosus][more]
gi|813168880|ref|XP_012203922.1|2.464e-3645.95hypothetical protein SPRG_20758 [Saprolegnia paras... [more]
gi|1173929339|gb|OQR82582.1|2.954e-3648.04Niemann-Pick C1 protein [Achlya hypogyna][more]
gi|1032149276|gb|OAO13300.1|8.279e-3641.01hypothetical protein AV274_4975 [Blastocystis sp. ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6958rna6958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications