rna6858, rna6858 (mRNA) Nannochloropsis gaditana

Overview
Namerna6858
Unique Namerna6858
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1037
Alignment locationCM002469.1:654216..655486 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100362g1.2187.mrna
Orig protein idgnl|cribi|Naga_100362g1.2187
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:654216..655486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100362g1gene6630Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6858rna6858-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23831.1cds6842Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6858 ID=rna6858|Name=rna6858|organism=Nannochloropsis gaditana|type=mRNA|length=1037bp
CGGACCTCCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCACTTCCCTCCTT
CCTCCCCCCCCCCAAGGTCGAAGCCCGCCGGTACAAGGACTTTGCCCGGA
AGCTTCTCTCCTTCTTCCACGGGCATCGAGAAGAAATCGCCCAAGTCCGA
AAATTGCGCGAAAGTCGGGCAAAAGAGGCGGCCCGGATGACGATCCGATC
TTCTCCCTCTTCAGGGAAGGCCCCCCCGGGCAGGGAAGTGATGGGGCCGG
AGGGACGGGGGAGCGAGGCAAGGGTGATGGAATCGGAAGACGAAGCGAAA
GTGGGAGGAAAGAGCAAGGCGGGCCGTCGGGAGGCGAAAGGTGAGCGTTT
GAAACGACAGTTGAGTAAACTGAAGGAGAAACGGGAAGGCGGGGGCGGGG
AGGGAGGAGGGGTACTGGCGTTGAAGGGGGTGGAGAGAGGTCTCGAAGGA
AGGAAGGAGGGAGGAAGAGGCGCCTCGAGGGCGACTGTGGTGAAGGACCA
AAGGGCTCAGGCACGGAGCTTGTTCGGTGGCGGCGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAAGAAGAGGGAAAGCTCTTCGTCCCGAGGGGTCCACA
GTGGAGGAGGGCATGGAGGAGGCGGAAGAGGAGACAAGCCTCCGATCGAT
GCCGGGGGCATTTGAGGATAAAGGCAGGGAGGGAGAGGGGGAGGAGGAGG
AGGAAGTAGAGGTACTGGCCACGGCCCCTCAGAAACACAAGGTCAGGCAA
GCCAGCCGGGGGGAAACAGAGCCGTCAGAGGGATGAGGCGGAGGGAGGGA
GGGAGGAATTTTAGGGAGTGCTGGGCGATGGGAAGGGAAGGAGGGCGAGC
ATGTATGATAGGAGCAGGGAAAGTTCTGGTTTAAGCGTCGACCTGGCGGG
GGCGTGGGGGCGGAGATGTTCTTTGGGAGAGGATGAGGTCCTGCAAGAAC
AACGCATGATTAAATCAAAAGACAAAAAAACATGTCGACTGGTACGCATC
AATTTTTGGGGGCCATCGACCAGGGCATGGCAACACG
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protein sequence of rna6858

>rna6858-protein ID=rna6858-protein|Name=rna6858|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MPLFTEYQGSRSRKVGRLLNFLLITAKGPNVRKAFPDKFYHFDAMEITFK
ITEGTAVALAGVQAFRVRGLHHQLSVEQRHSPLGMLRHEVKIIRGSHDRK
MTSRLSNKRRRRGPCPLVVMGLQLLIWSLPSTPAFMTSHCPLPASPSQLF
SKNAMRLLPPEISQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLA
GSEPVSPPAKASSPPRLALPRGGGSGAVLRPGTAMSAKRSTRYGPGGAQF
LPCHGLAGGPYS
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mRNA from alignment at CM002469.1:654216..655486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6858 ID=rna6858|Name=rna6858|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002469.1:654216..655486- (Nannochloropsis gaditana)
ATGCCGCTCTTTACTGAATATCAAGGGTCCCGATCACGTAAGGTTGGTCG
ATTACTCAACTTTCTCCTAATTACGGCCAAAGGACCGAATGTGAGAAAGG
CATTCCCGGATAAATTTTATCATTTCGATGCTATGGAAATAACATTCAAA
ATCACTGAAGGGACGTCAATATGAGCAGCAAAAATCAGTCAGACACTAAA
AGAAAGAAAAACTTGGAAGAAGCACAAATAAAAAGCAAGACCTTTTTTTT
CCCCTCAAAAGGCCTCCCACATGCTGTATCTCTAAGGATTAAATACAATC
AAAAGAAGGAGAAAATGTTGCACCCATCCTCCCTGTTCTTTCTATCTTGG
GTTTATTTTATTCTTTTCTCCTTTTGCGTCCGTATTCCTTTTTGAGCGCA
TACCCGGATTTTGACCTCCCAAGCGAGCGTCATATTTGTTGCAAGTAAAA
CCATCCCAGCCTCAAGACGGTGTTTCCCAGTACGGATCTCCCCCCTGTAT
CTAATTTCTCGCGATTTTTTTTAATTCCTGCAGAGCTGTGGCGTTGGCGG
GGGTACAGGCTTTTCGTGTGCGGGGGCTGCATCATCAGCTATCAGTGGAA
CAAAGACATTCGCCACTCGGTATGCTGCGGCACGAGGTTAAAATCATCAG
AGGAAGTCACGACAGAAAAATGACCAGCCGGTTGAGCAACAAAAGGAGAA
GACGAGGGCCTTGTCCTCTTGTCGTCATGGGTCTGCAGCTCCTGATTTGG
TCCCTGCCGTCAACACCAGCATTCATGACCTCGCACTGCCCACTGCCTGC
CTCCCCGTCCCAGCTCTTCTCAAAGAACGCGATGCGCCTCCTTCCACCTG
AAATTAGTCAGCCACAGATGCTGTTGCACGCACCTTCCCGTCCCTCTATT
CCCAAGCTGGTGTTGATGGCCGCCTCTGCCCCTTCGCTGGCCCCTCAGAC
GCCGCAGTCCCAGCTTGCAGGATCAGAGCCCGTGTCGCCGCCGGCTAAAG
CCTCCTCACCACCACGACTAGGTCGCGTCGAAGCCATGGCTTTGCTGCAA
TCCCTCGTCGACACCCTCCGCTTCGAGCAAGGCGGCGACGGGAGTACCCT
TTCCGCCCCGCCCTCCGTCCCGCCCTCCGTCCAGCCCTCCCTCGTGGAGG
AGGAAGTGGAGCCGTTCTACGCCCTGGCACAGCGATGTCGGCAAAGCGAT
CTACCCGATATGGTCCTGGAGGTGCTCAATTCCTACCGTGCCATGGCCTC
GCCGGGGGGCCTTATTCATAG
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Coding sequence (CDS) from alignment at CM002469.1:654216..655486-

>rna6858 ID=rna6858|Name=rna6858|organism=Nannochloropsis gaditana|type=CDS|length=2367bp|location=Sequence derived from alignment at CM002469.1:654216..655486- (Nannochloropsis gaditana)
CCCTCCCTCGTGGAGGAGGAAGTGGAGCCGTTCTACGCCCTGGCACAGCG
ATGTCGGCAAAGCGATCTACCCGATATGGTCCTGGAGGTGCTCAATTCCT
ACCGTGCCATGGCCTCGCCGGGGGGCCTTATTCATAGAGCTGTGGCGTTG
GCGGGGGTACAGGCTTTTCGTGTGCGGGGGCTGCATCATCAGCTATCAGT
GGAACAAAGACATTCGCCACTCGGTATGCTGCGGCACGAGGTTAAAATCA
TCAGAGGAAGTCACGACAGAAAAATGACCAGCCGGTTGAGCAACAAAAGG
AGAAGACGAGGGCCTTGTCCTCTTGTCGTCATGGGTCTGCAGCTCCTGAT
TTGGTCCCTGCCGTCAACACCAGCATTCATGACCTCGCACTGCCCACTGC
CTGCCTCCCCGTCCCAGCTCTTCTCAAAGAACGCGATGCGCCTCCTTCCA
CCTGAAATTAGTCAGCCACAGATGCTGTTGCACGCACCTTCCCGTCCCTC
TATTCCCAAGCTGGTGTTGATGGCCGCCTCTGCCCCTTCGCTGGCCCCTC
AGACGCCGCAGTCCCAGCTTGCAGGATCAGAGCCCGTGTCGCCGCCGGCT
AAAGCCTCCTCACCACCACGACTAGATGCCGCTCTTTACTGAATATCAAG
GGTCCCGATCACGTAAGGTTGGTCGATTACTCAACTTTCTCCTAATTACG
GCCAAAGGACCGAATGTGAGAAAGGCATTCCCGGATAAATTTTATCATTT
CGATGCTATGGAAATAACATTCAAAATCACTGAAGGGACCCCTCCCTCGT
GGAGGAGGAAGTGGAGCCGTTCTACGCCCTGGCACAGCGATGTCGGCAAA
GCGATCTACCCGATATGGTCCTGGAGGTGCTCAATTCCTACCGTGCCATG
GCCTCGCCGGGGGGCCTTATTCATAGAGCTGTGGCGTTGGCGGGGGTACA
GGCTTTTCGTGTGCGGGGGCTGCATCATCAGCTATCAGTGGAACAAAGAC
ATTCGCCACTCGGTATGCTGCGGCACGAGGTTAAAATCATCAGAGGAAGT
CACGACAGAAAAATGACCAGCCGGTTGAGCAACAAAAGGAGAAGACGAGG
GCCTTGTCCTCTTGTCGTCATGGGTCTGCAGCTCCTGATTTGGTCCCTGC
CGTCAACACCAGCATTCATGACCTCGCACTGCCCACTGCCTGCCTCCCCG
TCCCAGCTCTTCTCAAAGAACGCGATGCGCCTCCTTCCACCTGAAATTAG
TCAGCCACAGATGCTGTTGCACGCACCTTCCCGTCCCTCTATTCCCAAGC
TGGTGTTGATGGCCGCCTCTGCCCCTTCGCTGGCCCCTCAGACGCCGCAG
TCCCAGCTTGCAGGATCAGAGCCCGTGTCGCCGCCGGCTAAAGCCTCCTC
ACCACCACGACTAGATGCCGCTCTTTACTGAATATCAAGGGTCCCGATCA
CGTAAGGTTGGTCGATTACTCAACTTTCTCCTAATTACGGCCAAAGGACC
GAATGTGAGAAAGGCATTCCCGGATAAATTTTATCATTTCGATGCTATGG
AAATAACATTCAAAATCACTGAAGGGACCCCTCCCTCGTGGAGGAGGAAG
TGGAGCCGTTCTACGCCCTGGCACAGCGATGTCGGCAAAGCGATCTACCC
GATATGGTCCTGGAGGTGCTCAATTCCTACCGTGCCATGGCCTCGCCGGG
GGGCCTTATTCATAGAGCTGTGGCGTTGGCGGGGGTACAGGCTTTTCGTG
TGCGGGGGCTGCATCATCAGCTATCAGTGGAACAAAGACATTCGCCACTC
GGTATGCTGCGGCACGAGGTTAAAATCATCAGAGGAAGTCACGACAGAAA
AATGACCAGCCGGTTGAGCAACAAAAGGAGAAGACGAGGGCCTTGTCCTC
TTGTCGTCATGGGTCTGCAGCTCCTGATTTGGTCCCTGCCGTCAACACCA
GCATTCATGACCTCGCACTGCCCACTGCCTGCCTCCCCGTCCCAGCTCTT
CTCAAAGAACGCGATGCGCCTCCTTCCACCTGAAATTAGTCAGCCACAGA
TGCTGTTGCACGCACCTTCCCGTCCCTCTATTCCCAAGCTGGTGTTGATG
GCCGCCTCTGCCCCTTCGCTGGCCCCTCAGACGCCGCAGTCCCAGCTTGC
AGGATCAGAGCCCGTGTCGCCGCCGGCTAAAGCCTCCTCACCACCACGAC
TAGATGCCGCTCTTTACTGAATATCAAGGGTCCCGATCACGTAAGGTTGG
TCGATTACTCAACTTTCTCCTAATTACGGCCAAAGGACCGAATGTGAGAA
AGGCATTCCCGGATAAATTTTATCATTTCGATGCTATGGAAATAACATTC
AAAATCACTGAAGGGAC
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Synonyms
Publications