EWM23831.1, cds6842 (CDS) Nannochloropsis gaditana

Overview
NameEWM23831.1
Unique Namecds6842
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:655323..655486 -
Alignment locationCM002469.1:654466..654953 -
Alignment locationCM002469.1:654216..654352 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23831.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100362g1.2187.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:655323..655486 -
CM002469.1supercontigCM002469.1:654466..654953 -
CM002469.1supercontigCM002469.1:654216..654352 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23831.1 vs. NCBI_GenBank
Match: gi|585105094|gb|EWM23831.1| (hypothetical protein Naga_100362g1 [Nannochloropsis gaditana])

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 
Query:    1 MPLFTEYQGSRSRKVGRLLNFLLITAKGPNVRKAFPDKFYHFDAMEITFKITEGTAVALAGVQAFRVRGLHHQLSVEQRHSPLGMLRHEVKIIRGSHDRKMTSRLSNKRRRRGPCPLVVMGLQLLIWSLPSTPAFMTSHCPLPASPSQLFSKNAMRLLPPEISQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRLALPRGGGSGAVLRPGTAMSAKRSTRYGPGGAQFLPCHGLAGGPYS 262
            MPLFTEYQGSRSRKVGRLLNFLLITAKGPNVRKAFPDKFYHFDAMEITFKITEGTAVALAGVQAFRVRGLHHQLSVEQRHSPLGMLRHEVKIIRGSHDRKMTSRLSNKRRRRGPCPLVVMGLQLLIWSLPSTPAFMTSHCPLPASPSQLFSKNAMRLLPPEISQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRLALPRGGGSGAVLRPGTAMSAKRSTRYGPGGAQFLPCHGLAGGPYS
Sbjct:    1 MPLFTEYQGSRSRKVGRLLNFLLITAKGPNVRKAFPDKFYHFDAMEITFKITEGTAVALAGVQAFRVRGLHHQLSVEQRHSPLGMLRHEVKIIRGSHDRKMTSRLSNKRRRRGPCPLVVMGLQLLIWSLPSTPAFMTSHCPLPASPSQLFSKNAMRLLPPEISQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRLALPRGGGSGAVLRPGTAMSAKRSTRYGPGGAQFLPCHGLAGGPYS 262
[Close]
BLAST of EWM23831.1 vs. NCBI_GenBank
Match: gi|553184536|ref|XP_005854106.1| (hypothetical protein NGA_0502800, partial [Nannochloropsis gaditana CCMP526] >gi|422294957|gb|EKU22256.1| hypothetical protein NGA_0502800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.997 bits (271), Expect = 2.312e-25
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0 
Query:  159 PPEISQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRL 217
            P  +SQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRL
Sbjct:   66 PDHVSQPQMLLHAPSRPSIPKLVLMAASAPSLAPQTPQSQLAGSEPVSPPAKASSPPRL 124
The following BLAST results are available for this feature:
BLAST of EWM23831.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105094|gb|EWM23831.1|0.000e+0100.00hypothetical protein Naga_100362g1 [Nannochloropsi... [more]
gi|553184536|ref|XP_005854106.1|2.312e-2594.92hypothetical protein NGA_0502800, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6858rna6858Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications