rna6855, rna6855 (mRNA) Nannochloropsis gaditana

Overview
Namerna6855
Unique Namerna6855
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1958
Alignment locationCM002469.1:648940..650337 +

Link to JBrowse

Properties
Property NameValue
ProductThioredoxin superfamily protein
Orig transcript idgnl|cribi|Naga_100522g3.1285.mrna
Orig protein idgnl|cribi|Naga_100522g3.1285
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:648940..650337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100522g3gene6627Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6855rna6855-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23834.1cds6839Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6855 ID=rna6855|Name=rna6855|organism=Nannochloropsis gaditana|type=mRNA|length=1958bp
CCGAGTCTCGCTGCCCTTTTCATGGCGGTCATGCGTGTGTGCGTGCCATG
CTTTGTGTGAATGAAATAAAATCTTGGGAGGCTTTGAGCCCCGAATGCGC
GCGGTTTCCGGCGTTGTTGAGGCTATCAACGAGCATCATCACGTGCTCTC
TGGCCCTACATCAGCTTTTCCGCTTCTAAAGTTTTTTGGGCATAATTGAG
TGAAGGCATTATATTTGCTCCGCAACGTCATTGACTCCTAATTCTGCAAA
ACATACAGAGAAATAGAAAAGCTACGAAATCTTTCGCCCGCGTTGATAGC
TTCAGGGCTCGAGGTTGCCATTTCCTGTCACCTTTCTCACCCATTCATGA
CAATCATACGCTTCTATACTGACACAGGTGCCACCAATAGGTAGCTACGA
GCACGATTCATCGCTTTTGTGAAGAGCACCCGTAGCTGGCGCAGGAGCTG
AAGCGGCGACGCAGTTTTGCACGAAACCTGAGAGCCGTGATCTCGTGTTG
TCGTACGCTCCCCTAGTTCAATCACCGCAACAACACTACCAGTCCCATGG
CCAGTAGCATCGTAAGACGCAAAGCGGGGCCAAGGATTAAGGATGGTCTC
CTTTCCTGCCCGCTTTTCCTCCGTACCGCCCTACTTCTGGGCGCGCTGCT
CGGGCTCTTCCCCGTCAATGCCGCCAAGAACCTAACCACCGACGCCACGC
CTCTTTCTGACGACGGCTGCCATTTCAACTACCGCCTCCGGCGATGCGAG
CCTGTGGCCCATTGCCACTACAAATACCGGTTCTTGGACGCCACTTTCTC
CGAATCCTGCCGTTTAAAAGTTCAACGTCCGCATACCACCCCTTTGTATC
GCAGCAAAATCAACGGCAATCCTGCCCTCATTGCGGCGGGGGCGACGGCC
CTGTTCGGCGTCGACATCGCCGCCATCATTTTCACGCCCCTGTTGCAAAA
TTTCCCCATCACCTTCAACGTTGTCCAAGGTTTCATTCTGTGCCTGGCCG
GGGACACCTACTTCCAAATCGTCGAACAAGGCGGGCTCCGAGGGGTCAAG
CGCGTGGGCGTGAAGGCCTGGAGGGCGGTGCGTTCCGGTCTGATCGGCGC
CTTGAACAATGGCTTGGTCCATTACAGTTACTACAAGTACATCGACCGGC
GCTTTCCCTACCATTTGTTCACGGAGGAACGTTTTGGCAAGCCGGAGGGC
ACATACTACAAGCTCTGTGTTGCCTGGGCGAAATATTGGATCGAATGGCC
CACGATTGGCGTCTACAAAATCGCCTCCATGATGGTGTTGACGGCGGCCT
TGGACGGGCGCAACGGCTGGCGGAAACGGTTTGCGAAAATCCCCGAGAAA
TTCCGGAAACGCTTCCGGCTGACCTGGCTCCGTAGCCTCCAGGTCTGGCC
TATCTATGATACAATCTTATATGCCTATGTGCCAGCCTCCCACCGGCCGC
TGTTCAACACCTTTATGAGCATTGCGTGGGGGGGTTACCTCTCTCATATC
TCGCAGGTGGAGGGGGAGGACGGGGGGGAGGGAGGGGCGGTGGGAGTAGG
GGGAGGGGAGGAGGAGGAGGAGGAGGAGCAGACGAGAGAGGAAGAAGAGG
AGGAGGATTTTGAGGAGGAGGAGGACGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAAGACGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGACGAGGCTTG
GGCGTACGATGATTTGGTAGAGGAGGTGTGGCACGACGCGGAGGAGGCGG
AGAGAAGAAAGATGGTGATGGAAGGCGGTGATGAGGAAGGAAGGGAGGAG
TTGTGAGGGGGAGAAGGGAGGCCGCAGGGGGGATCGGAGGGGGTGGAAAC
AGGGGGGAGAGGGGGGGCAGGAAGGGAATGATGCCGAGTGCATGGAGGGA
GGGGACGTTATTTTGAAATTTGAGTTTAAAAATACACATCCAGTCGACGG
TGAACCCA
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protein sequence of rna6855

>rna6855-protein ID=rna6855-protein|Name=rna6855|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEY
SVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQF
PLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMT
YKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFG
TPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES
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mRNA from alignment at CM002469.1:648940..650337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6855 ID=rna6855|Name=rna6855|organism=Nannochloropsis gaditana|type=mRNA|length=1398bp|location=Sequence derived from alignment at CM002469.1:648940..650337+ (Nannochloropsis gaditana)
ATGGGTTACAGGACCCGCACTATGTTCCCTTGGCCTCTTGTCGGTCGATc
aagcctccttctcgcctccctcctactTGCCGCTGGCCATTTTCCTCGGA
CGGGTGTTGCCACGGCTCCCCCAGCTCTACCCTTGTCCGCTTCTGAATAC
AGTGTGGTCACTCTGGGCGACTCGTCCTCGGGTGTTGACGTGGATGTGTT
CCTGGATCTCGTCTGTATCGACACCAAGAAAGCCTGGCCGGTGATAAAGC
AAGTTATTCAAACCTACGATCGTGCAGTACAATGGCGCTTCCATCAGTTC
CCTCTGCCCTATCACACGAACGCCTTTATGGGTAAGAAAATTTGAGAAGC
AACTCACAGGAAATTTCCCCCTACCTTTCCCACATATTTTGAGCCACgca
cttttttttttttaaaacgcGGAGTGACAAAAGTGGAAACACCATGGGCG
ATGCTACGTGAGATGGATAAAAGTTTTGGAGTatcgcctctcttcctcct
tttctggAAGTGTCCGGTGCCAGAGCGAATGCTGTTTTCCGGACATTCAG
CTTCCCCCATCACTCCCCActcactcctccccttctcctttttctggcCC
CCAAAGTGGCCAAAGGGGCCGTTGTCGCTGCAACCTACGGGAACGACACG
GCGGCGCTCAGGTACATGGACATTGCCTTCGCGCGTCAGATCCAGGTCTC
GAACGAGCTCACGCAAGGCATGACGTACAAGGCAGTGGAAGGCGTGGTCG
CTGCGTGGGTGCAGGAGGCCACTGGCCTCGAGAGAGAGGTGGTGAGAAGG
AAgctccaggaagggggggtggaggaggcagtacGTTTCTCTTTCAAATA
CGCAACGATTCGTTCCATCTTTGGCACCCCCATGTTCGTGATCAACCAGA
TGCTGGTGCCTGGGTTGGACGGTGGGAGTGACGTGATGGATTGGGAAGAG
TACTTGGCGCCTTTACTGACACAAATGGCCAGGGAAAgctgaggaagggg
ttgtCTAGTGTTGAGAGATATGCCTTGTGCTGTGCCCTGTAAACACATTT
GGAGAGACAGATTCCTGAGTCTGGGGGCAAATATTGTATAGGAAAATAGA
AACTCTTAACGCCGCAATCTCTGAGCTGCGGCTGCTTTTCAAGGTGTAGA
GGTTTTCAGGGTACGAAGCCCCATGTACATGGCCGAAAAATGCAATATGT
ATGACTAGATTTTTACCCTGTGAATTCATCAACTTACGTCTGAGGTTGAA
TGAATGACACAAAAGACAGCTTCTTTCAATATCgacagaaaagaaaaagg
gctTCTAAAAAGAAACATGGCAGGCTCAAACAGGGTCAGAACATTTGTGA
TGTCGACGGTAGGACTTGAAGAGACACTAACCAGGACATGTCTTTTTA
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Coding sequence (CDS) from alignment at CM002469.1:648940..650337+

>rna6855 ID=rna6855|Name=rna6855|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at CM002469.1:648940..650337+ (Nannochloropsis gaditana)
ATGGGTTACAGGACCCGCACTATGTTCCCTTGGCCTCTTGTCGGTCGATc
aagcctccttctcgcctccctcctactTGCCGCTGGCCATTTTCCTCGGA
CGGGTGTTGCCACGGCTCCCCCAGCTCTACCCTTGTCCGCTTCTGAATAC
AGTGTGGTCACTCTGGGCGACTCGTCCTCGGGTGTTGACGTGGATGTGTT
CCTGGATCTCGTCTGTATCGACACCAAGAAAGCCTGGCCGGTGATAAAGC
AAGTTATTCAAACCTACGATCGTGCAGTACAATGGCGCTTCCATCAGTTC
CCTCTGCCCTATCACACGAACGCCTTTATGGTGGCCAAAGGGGCCGTTGT
CGCTGCAACCTACGGGAACGACACGGCGGCGCTCAGGTACATGGACATTG
CCTTCGCGCGTCAGATCCAGGTCTCGAACGAGCTCACGCAAGGCATGACG
TACAAGGCAGTGGAAGGCGTGGTCGCTGCGTGGGTGCAGGAGGCCACTGG
CCTCGAGAGAGAGGTGGTGAGAAGGAAgctccaggaagggggggtggagg
aggcagtacGTTTCTCTTTCAAATACGCAACGATTCGTTCCATCTTTGGC
ACCCCCATGTTCGTGATCAACCAGATGCTGGTGCCTGGGTTGGACGGTGG
GAGTGACGTGATGGATTGGGAAGAGTACTTGGCGCCTTTACTGACACAAA
TGGCCAGGGAAAgctgaATGGGTTACAGGACCCGCACTATGTTCCCTTGG
CCTCTTGTCGGTCGATcaagcctccttctcgcctccctcctactTGCCGC
TGGCCATTTTCCTCGGACGGGTGTTGCCACGGCTCCCCCAGCTCTACCCT
TGTCCGCTTCTGAATACAGTGTGGTCACTCTGGGCGACTCGTCCTCGGGT
GTTGACGTGGATGTGTTCCTGGATCTCGTCTGTATCGACACCAAGAAAGC
CTGGCCGGTGATAAAGCAAGTTATTCAAACCTACGATCGTGCAGTACAAT
GGCGCTTCCATCAGTTCCCTCTGCCCTATCACACGAACGCCTTTATGGTG
GCCAAAGGGGCCGTTGTCGCTGCAACCTACGGGAACGACACGGCGGCGCT
CAGGTACATGGACATTGCCTTCGCGCGTCAGATCCAGGTCTCGAACGAGC
TCACGCAAGGCATGACGTACAAGGCAGTGGAAGGCGTGGTCGCTGCGTGG
GTGCAGGAGGCCACTGGCCTCGAGAGAGAGGTGGTGAGAAGGAAgctcca
ggaagggggggtggaggaggcagtacGTTTCTCTTTCAAATACGCAACGA
TTCGTTCCATCTTTGGCACCCCCATGTTCGTGATCAACCAGATGCTGGTG
CCTGGGTTGGACGGTGGGAGTGACGTGATGGATTGGGAAGAGTACTTGGC
GCCTTTACTGACACAAATGGCCAGGGAAAgctga
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Synonyms
Publications