EWM23834.1, cds6839 (CDS) Nannochloropsis gaditana

Overview
NameEWM23834.1
Unique Namecds6839
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:648940..649270 +
Alignment locationCM002469.1:649546..649931 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23834.1
ProductThioredoxin superfamily protein
Orig transcript idgnl|cribi|Naga_100522g3.1285.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:648940..649270 +
CM002469.1supercontigCM002469.1:649546..649931 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|585105099|gb|EWM23834.1| (Thioredoxin superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 490.345 bits (1261), Expect = 2.145e-175
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
            MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES
Sbjct:    1 MGYRTRTMFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|553181393|ref|XP_005853559.1| (hypothetical protein NGA_0488300 [Nannochloropsis gaditana CCMP526] >gi|422295502|gb|EKU22801.1| hypothetical protein NGA_0488300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 461.455 bits (1186), Expect = 3.683e-164
Identity = 226/231 (97.84%), Postives = 228/231 (98.70%), Query Frame = 0
Query:    8 MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
            MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGV+VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAF+   GAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES
Sbjct:    1 MFPWPLVGRSSLLLASLLLAAGHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVNVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFI---GAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 228          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|299115356|emb|CBN74181.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.701 bits (291), Expect = 4.709e-28
Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 0
Query:   41 PALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYG---NDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMA 235
            PA+P     + ++  G   + + V+V+LDL C D   AWPV+ +V + Y    ++ +  FPLPYH NAF  AK A     Y     D +   +    F  Q ++SN+ T+ MT   +E ++ +W   ++G+  +     + +  VE   R  FKY  +  + GTP   I  +L  GLDG +   DW++ L PLL++ +
Sbjct:   50 PAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLLSRTS 247          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1102291930|gb|OIT38062.1| (hypothetical protein A4A49_00107 [Nicotiana attenuata])

HSP 1 Score: 107.842 bits (268), Expect = 5.962e-25
Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
            ++ F D VC D++ AWP +KQ +Q Y   V    H FPLPYH NAF+ ++   V     N +A  + ++  F  Q +  N+ T  ++  ++   VA +   A G    +V++    +   ++A RFSFKY  ++ ++GTP F IN   +P      D   W   L PL+ Q
Sbjct:   52 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFDLSRASLVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFINGFPLPDAGSAVDYKGWRRVLDPLVHQ 221          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|698519963|ref|XP_009804846.1| (PREDICTED: uncharacterized protein LOC104250007 [Nicotiana sylvestris] >gi|1025271763|ref|XP_016493823.1| PREDICTED: uncharacterized protein LOC107813122 [Nicotiana tabacum])

HSP 1 Score: 107.842 bits (268), Expect = 7.755e-25
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
            ++ F D VC D++ AWP +KQ +Q Y   V    H FPLPYH NAF+ ++   V     N +A  + ++  F  Q +  N+ T  ++  +V   VA +   A G    +V++    +   +++ RFSFKY  ++ ++GTP F +N   +P      D   W   L PL+ Q
Sbjct:   70 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFNLSRASVVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQSTRFSFKYGCVKGVYGTPFFFVNGFPLPDAGSAVDYNGWRRVLDPLIHQ 239          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1111022111|ref|XP_019262089.1| (PREDICTED: uncharacterized protein LOC109239937 [Nicotiana attenuata])

HSP 1 Score: 107.842 bits (268), Expect = 8.893e-25
Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQ 233
            ++ F D VC D++ AWP +KQ +Q Y   V    H FPLPYH NAF+ ++   V     N +A  + ++  F  Q +  N+ T  ++  ++   VA +   A G    +V++    +   ++A RFSFKY  ++ ++GTP F IN   +P      D   W   L PL+ Q
Sbjct:   70 IEAFFDPVCPDSRDAWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQEEFYNKATFDLSRASLVEKVARFSTNAIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFINGFPLPDAGSAVDYKGWRRVLDPLVHQ 239          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1176075190|ref|XP_020607586.1| (uncharacterized protein LOC110046239 [Orbicella faveolata])

HSP 1 Score: 106.686 bits (265), Expect = 1.084e-24
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 0
Query:   56 GDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYD-RAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLL 231
            G+ S+ + +  F+DL C D+++AWP +K+V   Y    +++    FPLPYHTNAFM A+       Y N T  + +MD+ F  Q  + N  T       V  ++A  +     +E+ V++  L     +E  R S+KY   R++ GTP F +N + V        V DW+  + PLL
Sbjct:   46 GEPSAPIHLTAFVDLTCPDSQRAWPTVKKVADMYGPETIRFTVQLFPLPYHTNAFMAAQSVYTVEAY-NSTLVINWMDVVFENQNLLYNFQTMEKNRYDVINIIAD-LGSKLDIEKSVIKDGLASSEYDEHTRISWKYGCSRTVSGTPFFFVNGVFVNQASSTWTVEDWKNLIDPLL 220          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1026103453|ref|XP_016550786.1| (PREDICTED: uncharacterized protein LOC107850633 [Capsicum annuum])

HSP 1 Score: 107.071 bits (266), Expect = 1.209e-24
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 0
Query:   64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATG-LEREVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLT 232
            ++ FLD VC D++ +WP +K+ IQ Y   +    H FPLPYH NAF+ ++   V     N +A  R ++  F +Q +  N+ +  ++  +V   VA +   A G L    V+    +   ++A R SFKY  ++ ++G P F +N   +PG     D  +W   L PL +
Sbjct:   51 IEAFLDPVCPDSRDSWPPLKRAIQHYGSRISLLVHPFPLPYHDNAFITSRALHVVNDL-NTSATYRLLEAFFGQQDKFYNQASFHLSKASVVDKVAKFTSNAIGNLNYAAVKGGFTDPKTDQATRTSFKYGCVKGVYGAPFFFVNGFPLPGAGSPLDYNEWRNILDPLFS 219          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|697148124|ref|XP_009628237.1| (PREDICTED: uncharacterized protein LOC104118648 [Nicotiana tomentosiformis] >gi|1025292933|ref|XP_016497944.1| PREDICTED: uncharacterized protein LOC107816711 [Nicotiana tabacum])

HSP 1 Score: 107.071 bits (266), Expect = 1.213e-24
Identity = 54/175 (30.86%), Postives = 87/175 (49.71%), Query Frame = 0
Query:   64 VDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLER-EVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARE 237
            ++ F D VC D++ +WP +KQ +Q Y   V    H FPLPYH NAF+ ++   V     N +A  + ++  F  Q +  N+ T  ++  +V   VA +     G    +V++    +   ++A RFSFKY  ++ ++GTP F +N   +P      D   W   L PL+ Q   E
Sbjct:   70 IEAFFDPVCPDSRDSWPPLKQALQQYGSRVSLLVHPFPLPYHDNAFLTSRALHVVNKL-NASATYKLLESFFDHQAEFYNKATFALSRASVVEKVARFSTNTIGNSNYDVIKAGFTDYKTDQATRFSFKYGCVKGVYGTPFFFVNGFPLPDAGSALDYKGWRRVLDPLVHQQDTE 243          
BLAST of EWM23834.1 vs. NCBI_GenBank
Match: gi|1137205862|gb|OMO75481.1| (Thioredoxin-like protein [Corchorus olitorius])

HSP 1 Score: 105.531 bits (262), Expect = 3.445e-24
Identity = 66/228 (28.95%), Postives = 105/228 (46.05%), Query Frame = 0
Query:   14 VGRSSLLLASLLLAA--GHFPRTGVATAPPALPLSASEYSVVTLGDSSSGVDVDVFLDLVCIDTKKAWPVIKQVIQTYDRAVQWRFHQFPLPYHTNAFMVAKGAVVAATYGNDTAALRYMDIAFARQIQVSNELTQGMTYKAVEGVVAAWVQEATGLE-REVVRRKLQEGGVEEAVRFSFKYATIRSIFGTPMFVINQMLVPGLDGGSDVMDWEEYLAPLLTQMARES 238
             G+S+  LA   L A  G F RT  A + P  P     +        S  + ++ F D VC D++ +WP +KQ IQ Y   V    H  PLPYH  AF  ++ A+      N +A  R ++  F  Q +  N+ T+ M+  AV   +  +  ++ G      ++    +   +   R SFKY+  R ++GTP F IN   +P      D   W+ ++ PLL +  ++S
Sbjct:    3 TGKSAAFLALFCLFACVGVFHRTVKAQSLP--PAKYDGFVYTNHKVDSDTIMIEAFFDPVCPDSRDSWPPLKQAIQHYGSRVSLIIHLLPLPYHDYAFATSR-ALHVVNMLNPSATFRLLESFFEDQDRFYNDQTRNMSRVAVLNEIIKFTADSVGNSYYSAIQSGFNDRKTDLKTRVSFKYSASRGVYGTPFFFINGFSLPDAGSPIDYKGWKSFIDPLLAEQGKKS 227          
The following BLAST results are available for this feature:
BLAST of EWM23834.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105099|gb|EWM23834.1|2.145e-175100.00Thioredoxin superfamily protein [Nannochloropsis g... [more]
gi|553181393|ref|XP_005853559.1|3.683e-16497.84hypothetical protein NGA_0488300 [Nannochloropsis ... [more]
gi|299115356|emb|CBN74181.1|4.709e-2831.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|1102291930|gb|OIT38062.1|5.962e-2532.16hypothetical protein A4A49_00107 [Nicotiana attenu... [more]
gi|698519963|ref|XP_009804846.1|7.755e-2531.58PREDICTED: uncharacterized protein LOC104250007 [N... [more]
gi|1111022111|ref|XP_019262089.1|8.893e-2532.16PREDICTED: uncharacterized protein LOC109239937 [N... [more]
gi|1176075190|ref|XP_020607586.1|1.084e-2432.20uncharacterized protein LOC110046239 [Orbicella fa... [more]
gi|1026103453|ref|XP_016550786.1|1.209e-2431.18PREDICTED: uncharacterized protein LOC107850633 [C... [more]
gi|697148124|ref|XP_009628237.1|1.213e-2430.86PREDICTED: uncharacterized protein LOC104118648 [N... [more]
gi|1137205862|gb|OMO75481.1|3.445e-2428.95Thioredoxin-like protein [Corchorus olitorius][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6855rna6855Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications