EWM23838.1, cds6831 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|585105106|gb|EWM23838.1| (extrinsic protein in photosystem ii [Nannochloropsis gaditana]) HSP 1 Score: 397.127 bits (1019), Expect = 7.061e-140 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 Query: 1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL Sbjct: 1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|553187404|ref|XP_005854604.1| (extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526] >gi|422294456|gb|EKU21756.1| extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 397.127 bits (1019), Expect = 1.836e-139 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 Query: 1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL Sbjct: 28 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|873226497|emb|CEM21093.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 130.568 bits (327), Expect = 2.570e-34 Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0 Query: 39 PESALAKSGEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 P +A AK+G+ PK S FG GG A A+ Q+ P YSPYS YGTGE+ ++ P + +V KV ES R+ K+ YL+++ WEEVR EL+RQ YDLR + LA +P+ASKA K ++D++ L+VA+RRK+ D + Y A D +F+K + Sbjct: 69 PLAASAKTGDAPKASYFGFGGGASTLSEGAAYGSDQEAPLYSPYSVYGTGEDRVWVPNSKQEVGRKVKKVEESAGRIAKVKDYLDQQLWEEVRMELSRQTYDLRENMNSLASVSGNPDASKAAKKFYRDLDKLSVAARRKEQDAALGFYKDAVNDLKSFIKVV 231
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|223993775|ref|XP_002286571.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977886|gb|EED96212.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 91.2781 bits (225), Expect = 2.318e-19 Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 0 Query: 47 GEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGT--GENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 GE P+ SVFG+ GD A+ Q TYSPYS YG ++ALF+ NA ++ + ES+KR+ + Y+EKKQW V+ ELTR MY+ R + + LA Q+PE K K+ FQ IE+ ++ + K D AA + + D F +L Sbjct: 58 GESPRFSVFGVIGDGTSYSEGAAYGSDQSAETYSPYSVYGKVGSKDALFEAGNAGEIARKKGYIVESQKRLKNLPGYVEKKQWFNVKDELTRYMYETRGAVRGLA---QTPEQKKLAKAFFQAIEEASLQATLKNGDKCAAASADSIKLLDQFYASL 211
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|299117621|emb|CBN75463.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.2781 bits (225), Expect = 2.419e-19 Identity = 56/152 (36.84%), Postives = 86/152 (56.58%), Query Frame = 0 Query: 47 GEGPKQSVFG-LGGD----AASSPFVQDVPTYSPYSPYGTGENALFKPLN-ADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFL 192 G G KQ+ FG +G D S + + TYSPYSPY G++AL+K + A K+ + +S+KR+ + ++E K+WEE+R+ LT + Y LR + LA +K P+A+ K ++DIE LTV +R+K AY+ AQ +L Sbjct: 61 GTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADK--PQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYL 210
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|397631462|gb|EJK70163.1| (hypothetical protein THAOC_08500 [Thalassiosira oceanica]) HSP 1 Score: 90.5077 bits (223), Expect = 4.017e-19 Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 0 Query: 47 GEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGT--GENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 GE P+ SVFG+ GD A+ Q YSPYS YG +AL+ NA +V+ + ES+KR+ K+ Y+E+K+W V+ ELTR MY+ R + + LAE +PE K KS FQ IE+ ++ + K D AA + + D F+ +L Sbjct: 60 GESPRFSVFGVIGDGTSYSEGAAYGSDQSSAVYSPYSVYGNVGSSDALYSANNAGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTRYMYETRGAVRGLAE---TPEQKKIAKSFFQAIEEASLQATLKNQDKCAAASADSAKLLDQFVASL 213
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|676395075|ref|XP_009040815.1| (hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens] >gi|323448531|gb|EGB04428.1| hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens]) HSP 1 Score: 93.2041 bits (230), Expect = 1.026e-18 Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 0 Query: 48 EGPKQSVFGLGGDAAS----SPFVQDV--PTYSPYSPYG-TGE-NALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYS 182 E PK S FG+GG+ + + + D YSPYS YG G+ A++K N +V + +S KRV K +Y+EKK WE+VR+EL RQ+Y++R + LA PEA+ A K +QD+E++ + S+RK+ + AY+ Sbjct: 50 ESPKFSFFGIGGNGGTYSEGAMYGSDQKDAVYSPYSVYGKLGDPKAVYKKYNDKEVAFKKAMFADSSKRVAKTKQYIEKKSWEDVRSELERQVYNMRGTMNYLAAASGKPEATAAAKKFYQDMEEVNLLSKRKKQAAALDAYA 192
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|1210519950|dbj|GAX21201.1| (hypothetical protein FisN_26Lh159 [Fistulifera solaris] >gi|1210522454|dbj|GAX18857.1| hypothetical protein FisN_26Hh159 [Fistulifera solaris]) HSP 1 Score: 88.9669 bits (219), Expect = 1.363e-18 Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 0 Query: 47 GEGPKQSVFGLGGDAAS----SPFVQDVPT--YSPYSPYG-TGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 GE P+ SVFGL GD +S + + D + YSPYS YG G+ +LF P + + + E+KKR+DK+ K++EKK W EV TEL R M + R + + LA Q+PE K + F+ IE + +RRK + A+ + A AF+ ++ Sbjct: 47 GESPRFSVFGLIGDGSSYSEGAAYGTDQSSKLYSPYSVYGEAGDGSLFNPADPSIAGKKKAVLAETKKRLDKLPKFIEKKAWFEVTTELDRYMGETRAAVRYLA---QTPEQKKKATAFFKAIESTDINARRKNQEACAASQKESVAALAAFVSSI 199
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|215421034|dbj|BAG85211.1| (extrinsic protein in photosystem II [Chaetoceros gracilis]) HSP 1 Score: 87.8113 bits (216), Expect = 4.749e-18 Identity = 62/177 (35.03%), Postives = 94/177 (53.11%), Query Frame = 0 Query: 26 MFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAAS----SPFVQDVP--TYSPYSPYG-TGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 +F A +P +A A GE P+ SVFGL GD S + + D YSPYS Y GE +L+KP NA+ + + + E+K R+ KI Y++KK+W V+ ELTR MY+ R + + L+ + E ++ F+ +ED A+ K+ D +A+ +A A DAF L Sbjct: 38 VFGKIAAAGAAFLPVAANAAVGESPRFSVFGLVGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDNAEYLARKKAVLAETKNRLQKIPAYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEV---FFRALEDTYGAATLKKGDAVKASNDKAIAALDAFTATL 211
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|219119081|ref|XP_002180307.1| (oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408564|gb|EEC48498.1| oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 81.6481 bits (200), Expect = 6.585e-16 Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 0 Query: 38 MPESALAKSGEGPKQSVFGLGGDAAS----SPFVQDVPT--YSPYSPYGTGEN--ALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195 +P +A A GE P+ SVFGL GD S + + D + YSPYS YG N +L+K N + + + + E++KR+ K+ Y+EKK+W EV TEL+R MY+ R + L +SPE K + F+ IE +++R+K + +A + + DAF +L Sbjct: 38 LPVAANAAVGESPRFSVFGLIGDGTSYSEGAAYGTDQASKLYSPYSVYGEVGNPDSLYKDTNPEYLARKKAILAETRKRLQKLPAYIEKKKWFEVTTELSRFMYETRGAIDFLG---KSPEQKKKAVAFFKAIEKTNLSARQKDQAAAASAAADTISTLDAFTSSL 200 The following BLAST results are available for this feature:
BLAST of EWM23838.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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