rna6847, rna6847 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6847
Unique Name	rna6847
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2183
Alignment location	CM002469.1:632328..634427 +

Link to JBrowse

Properties


Property Name	Value
Product	extrinsic protein in photosystem ii
Orig transcript id	gnl\|cribi\|Naga_100273g6.3654.mrna
Orig protein id	gnl\|cribi\|Naga_100273g6.3654
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:632328..634427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100273g6	gene6619	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6847	rna6847-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23838.1	cds6831	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:632328..634427+
coding sequence from alignment at CM002469.1:632328..634427+

mRNA sequence

>rna6847 ID=rna6847|Name=rna6847|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp
TTCCCGTGCCCGTCCATCCCTCGGGGCCCACCTGCTTCCCTCCTATCCCT
CCATTGTACACGCACACAGGGGAAAAGCACAGCGAAGGATGCCTCCGCAG
AACGACGCTGCCCTCGGAAGTGGTCTCTTTCGGAACCGCTTCGGTCGCAA
AAGCTCCGCTTCTTCCCTTCTTGTCAATGACGGCAGTATGGGAAGCACCG
AGCCTGTCCTTTCCACGGCGGCCGTACCGGCAACGGAGCCGGCGGGGAAA
TCCTACACATGGCAAGAAGTAGCCGAGCACAACACAGAGAAAAGTTTGTG
GGTCACTGTGCGAGGGAAGGTGTACGACATATCCAGTTGGGTGGACAACC
ATCCGGGGGGCAAGGAGATCCTGCTGTTGGCGGCGGGGAGGGACATCACG
TACGCCTTCGATTCCTACCACCCGTTCACGGAGAAACCGACGCAGGTGCT
CAACAAGTTTGAGATCGGCCGGGTCACCTCCTACGAATTCCCCCAGTACA
AGGCGGACACTCGTGGTTTCTACAAGGCCCTGTGCACCCGCGTGAATGAC
TACTTTGTGGCCCACAAGCTCAACCCTAAGGACCCAATCCCCGGCATCTG
GCGCATGTGCCTCGTCGCCCTGGTGGCCTTGGCCTCTTTCGTGGTCTGCA
ACGGCTACGTGGGTGTGGAAGGGACATGGGCCGGGACTACGTGGGCCCGG
CTAGTGGCGGCGGTGGTGTTTGGGATCTGTCAGGCCCTTCCTTTGTTGCA
CGTCATGCACGACTCCTCCCACCTGGCGTTTGGCAATACAGAACGCTGGT
GGCAGGTGGGGGGGCGGCTGGCGATGGATTTCTTCGCCGGGGCGAACATG
ACCAGCTGGCACAACCAACACGTGATCGGCCACCATATCTACACGAATGT
CTTCCTCGCCGACCCGGATTTACCCGACAAAGCCGCGGGAGATCCGAGAA
GATTGGTGCAGAAACAGGCGTGGCAAGCCATGTATAAATGGCAGCACTTG
TACCTTCCCCCTCTGTACGGCATCCTGGGGATCAAATTTCGAGTCCAAGA
TATCATGGAGACCTTCGGAAGTGGCACGAACGGGCCCGTACGGGTGAACC
CCTTGTCCTTTTTCCAATGGGCCGAGATGATTTTCACCAAAATGTTTTGG
GCAGGATGGAGGATCGCGTTCCCCTTGCTCTCCCCGTCTTTCCACACCGG
CTGGGCTGCTTTTTCCGCCCTCTTCCTGGTCAGCGAGTTTATGACCGGGT
ACTTCCTCGCCTTTAATTTCCAAGTCTCCCACGTCTCCTCCGAATGCGAC
TACCCCTTGGGCGAAGCCCCCCGAGAGGGAGAGGATGGCAACATCGTGGA
CGAATGGGCGGTCTCCCAAATAAAGAGCAGTGTGGACTATGCGCACAACA
ACCCAGTAACCACCTTCCTCTGCGGCGCCCTGAACTACCAAGTCACTCAC
CATCTGTTCCCCACTGTGAGTCAATACCACTACCCAGCCATCGCGCCCAT
CATCCAAGACGTGTGTCGGGAGTTCAATGTGGATTACAAGGTTCTGCCGG
ATTTTGTGACGGCTTTCCACGCCCACATAGCGCATCTGAAGACGTTGGGG
GAGCGGGGGGAGGCAGCAGAAGTTCACATGGGCTAATGTGGGATGCATGT
GGAGGATGAGAGACGTCCAGTCGTGGAGTCCTTACAAGGCTACGGAAGGA
ATATATTGTGATCTTGAGAAAATCAAAATCAAACCAGCTCTAGGATGATC
AGGCGGTTGTATGACACAAGGTGAATTTCGGGAGGCTAAGAAGGAGTCGG
TATGAGAACTTGAGGACGAGATGTCTCTTATAAGGCATTTAAAGGAATTG
ATTTTTTAATAGGGTGTCAAGTTGTACTAGTTTTGCAGATATGTAGGAAG
ATGGTTTTGACTATCATACAAATAATGAAACACAGCACAGCATGACGGAA
ATCCTTATTTGTGGTGTTGATTAATCTGCCCGTCGGTTCTATATCTGCGC
TTGAACTCGTATACATCATGTTTCGTCTTGGTACATGGGGTATTGTATCA
TGCTCCTTTTTTTTAGCGCGGTATTGCGCAACACAAGTAAATGATGAAGT
CTCACAATCATATCAGTACGGGCTATGACACTTTGGTAGTACTCACAGAC
GCCCCTACCCATTGGGTCGAGTCCTTCCCCACC

protein sequence of rna6847

>rna6847-protein ID=rna6847-protein|Name=rna6847|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGP
KQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTS
KVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPE
ASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL

mRNA from alignment at CM002469.1:632328..634427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6847 ID=rna6847|Name=rna6847|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002469.1:632328..634427+ (Nannochloropsis gaditana)
CGTGGCCAGACCTCGATCTAagtccccatcccccctttcaTGGATGTCAC
TTGACTATGGCATATCTTTCTCTTCAACATGTCATTGCACGACTTGTCCG
TAGAAAAccctgccctcttccgcACATTGCAATTATTGAACGAAAAGTCG
CACGAGCAACCTTGTCGTCTGGAGGACTTGAAGGCCTGCAGCCATCAGGC
AACGACATATTAAAGGAATTATATGACCAATTCACGACCGTTGATCTTAA
ATTTTGGCCACAGGAGCATGTTCTAAGATCTATAGAGGCTAATGTAGATG
CAAAGCTTTCATGTCACCCCTCACCGGCTGGACACATGTGCAGAAGGCGC
TGCCGTGAGGCGGGCGTTCCTGGGCCTTTTCTGCATCTCTATTTCTCACC
CAAcacatcccttccccccttacGACTTTGATATATAGATTGTTGGCATC
CAAGTTCAAATTTATCCACTTTCCATCATGCGTACCATCTCTTTCCTGGC
CCTTGCcacccctgccctcgccttcaTGACCCCCATGCCTGTCACTGAAC
GCAAGTAAGTACATTTGTTTGTCCAACTGCCTTCTCCGCTGTCGAGTCTA
ATGGAGGGAACGAAGGGATCGCGTTTTGAACCTGCGCACATTCCCCCTAG
CCGCCTTGTGCGGTCGTCGAATCACCCTTTGGTTCCCATGGCGGACAGCT
TTTCCCATCGAGGCCCCTCAATTTCCCCAAatgcttcccttccccccttc
ccagcGTCATGCGCATGACCGCCGAGAAGACAAGCTCCCCCCTGAGCCTG
GGTAACGTCGTCAAGGGATttgccacggcctccatgtTTTTTAATTTCGC
CACTATGCCCCTGACGTCCATGCCTGAAAGTGCCCTGGCCAAGTCTGGAG
AGGGGCCCAAGCAGTCTGTTTTCGGCCTGGGGGGCGAcgctgcgtcctcc
ccttttgTGCAGGACGTACCTACCTACTCGCCTTACtgtacgaaggaggg
ggaaaagggcgggaggcgtgAAAGGGTGTGTCTACACTGTTCTTGCCCCA
CCCTTGCCGTGCCAGGAGTACCGGTCCATGCATGTACACTTCGTGCTCCT
AGCCATAGAAACAAAACTGATCCACGCCCCCACCCTCtgttccctcctct
accGCCCCTTCAGCTCCCTACGGGACCGGTGAGAACGCTCTCTTCAAGCC
CCTGAACGCGGACGACGTGAAGCTCTACACTTCCAAGGTGACCGAGTCCA
AGAAGCGTGTGGACAAGATTGCCAAGTAcctggagaagaagcaggtgCGG
CATTGAggtttcctcccctctttccctccctccttcggcccctGTCTGTG
CCttctctcgctctccttctccccccctttttcctgccAAGGCGTCCACC
CCGCATTCATTCCTGCTCTCCTCATGTGCATTCTCGCTTCATGCCATCta
tccccccctgccttcgtCTTTTGTgtagtgggaggaggtgcgcaCGGAAT
TGACCCGTCAAATGTACGACTTGCGCCGTTCGGGCCAAAAACTTGCCGAG
AACAAGCAGAGCCCTGAGGCCAGCAAGGCCCTCAAGAGCCTCTTCCAGGA
CATTGAAGATTTGACCGTGGCCAGCCGTCGCAAGCAGGTGGATGTGTCCC
AGGCGGCTTACTCGCGGGCCCAGGCGGACTTTGACGCGTTCCTGAAAGCA
CTTTAAacgcgggggggaaatggacaCAGactgagagggaggagatagaa
aggaggggactcGTTGGAAtgctggagagggaaagacagTGGTACGCTTC
GCTGGTTTCGATGGGAATTTAGGTGTGTTGGTGCCTGTGTTTCTCTTTGG
CgatggcgggaggtggagggggaaggcgagaaggGTGGATGGGGCAGCGA
GATGGAAAAGCTCCAAGGTTCTCATGAAAGAAGCAGGCAAGAGACCGAAA
CCCTCGGTGATGTGAAGAAACGGAGCTAACGCGCAAGATGCTACATTTCA
AGTTGGAGGGGTGACCCCACCTAGTTGACGATGTGGGAGGCATCTGATGT
CCCACTGGTCCCTatcaaagggggggggaatcaACTTATGATTGCTTTCC

Coding sequence (CDS) from alignment at CM002469.1:632328..634427+

>rna6847 ID=rna6847|Name=rna6847|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at CM002469.1:632328..634427+ (Nannochloropsis gaditana)
ATGCGCATGACCGCCGAGAAGACAAGCTCCCCCCTGAGCCTGGGTAACGT
CGTCAAGGGATttgccacggcctccatgtTTTTTAATTTCGCCACTATGC
CCCTGACGTCCATGCCTGAAAGTGCCCTGGCCAAGTCTGGAGAGGGGCCC
AAGCAGTCTGTTTTCGGCCTGGGGGGCGAcgctgcgtcctccccttttgT
GCAGGACGTACCTACCTACTCGCCTTACtCTCCCTACGGGACCGGTGAGA
ACGCTCTCTTCAAGCCCCTGAACGCGGACGACGTGAAGCTCTACACTTCC
AAGGTGACCGAGTCCAAGAAGCGTGTGGACAAGATTGCCAAGTAcctgga
gaagaagcagtgggaggaggtgcgcaCGGAATTGACCCGTCAAATGTACG
ACTTGCGCCGTTCGGGCCAAAAACTTGCCGAGAACAAGCAGAGCCCTGAG
GCCAGCAAGGCCCTCAAGAGCCTCTTCCAGGACATTGAAGATTTGACCGT
GGCCAGCCGTCGCAAGCAGGTGGATGTGTCCCAGGCGGCTTACTCGCGGG
CCCAGGCGGACTTTGACGCGTTCCTGAAAGCACTTTAAATGCGCATGACC
GCCGAGAAGACAAGCTCCCCCCTGAGCCTGGGTAACGTCGTCAAGGGATt
tgccacggcctccatgtTTTTTAATTTCGCCACTATGCCCCTGACGTCCA
TGCCTGAAAGTGCCCTGGCCAAGTCTGGAGAGGGGCCCAAGCAGTCTGTT
TTCGGCCTGGGGGGCGAcgctgcgtcctccccttttgTGCAGGACGTACC
TACCTACTCGCCTTACtCTCCCTACGGGACCGGTGAGAACGCTCTCTTCA
AGCCCCTGAACGCGGACGACGTGAAGCTCTACACTTCCAAGGTGACCGAG
TCCAAGAAGCGTGTGGACAAGATTGCCAAGTAcctggagaagaagcagtg
ggaggaggtgcgcaCGGAATTGACCCGTCAAATGTACGACTTGCGCCGTT
CGGGCCAAAAACTTGCCGAGAACAAGCAGAGCCCTGAGGCCAGCAAGGCC
CTCAAGAGCCTCTTCCAGGACATTGAAGATTTGACCGTGGCCAGCCGTCG
CAAGCAGGTGGATGTGTCCCAGGCGGCTTACTCGCGGGCCCAGGCGGACT
TTGACGCGTTCCTGAAAGCACTTTAAATGCGCATGACCGCCGAGAAGACA
AGCTCCCCCCTGAGCCTGGGTAACGTCGTCAAGGGATttgccacggcctc
catgtTTTTTAATTTCGCCACTATGCCCCTGACGTCCATGCCTGAAAGTG
CCCTGGCCAAGTCTGGAGAGGGGCCCAAGCAGTCTGTTTTCGGCCTGGGG
GGCGAcgctgcgtcctccccttttgTGCAGGACGTACCTACCTACTCGCC
TTACtCTCCCTACGGGACCGGTGAGAACGCTCTCTTCAAGCCCCTGAACG
CGGACGACGTGAAGCTCTACACTTCCAAGGTGACCGAGTCCAAGAAGCGT
GTGGACAAGATTGCCAAGTAcctggagaagaagcagtgggaggaggtgcg
caCGGAATTGACCCGTCAAATGTACGACTTGCGCCGTTCGGGCCAAAAAC
TTGCCGAGAACAAGCAGAGCCCTGAGGCCAGCAAGGCCCTCAAGAGCCTC
TTCCAGGACATTGAAGATTTGACCGTGGCCAGCCGTCGCAAGCAGGTGGA
TGTGTCCCAGGCGGCTTACTCGCGGGCCCAGGCGGACTTTGACGCGTTCC
TGAAAGCACTTTAA

Synonyms

Publications