EWM23838.1, cds6831 (CDS) Nannochloropsis gaditana

Overview
NameEWM23838.1
Unique Namecds6831
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:633086..633314 +
Alignment locationCM002469.1:633491..633621 +
Alignment locationCM002469.1:633806..634033 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23838.1
Productextrinsic protein in photosystem ii
Orig transcript idgnl|cribi|Naga_100273g6.3654.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:633086..633314 +
CM002469.1supercontigCM002469.1:633491..633621 +
CM002469.1supercontigCM002469.1:633806..634033 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0009523photosystem II
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
IPR008797PSII_PsbQ
Homology
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|585105106|gb|EWM23838.1| (extrinsic protein in photosystem ii [Nannochloropsis gaditana])

HSP 1 Score: 397.127 bits (1019), Expect = 7.061e-140
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL
Sbjct:    1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|553187404|ref|XP_005854604.1| (extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526] >gi|422294456|gb|EKU21756.1| extrinsic protein in photosystem II [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 397.127 bits (1019), Expect = 1.836e-139
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL
Sbjct:   28 MRMTAEKTSSPLSLGNVVKGFATASMFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|873226497|emb|CEM21093.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 130.568 bits (327), Expect = 2.570e-34
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   39 PESALAKSGEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            P +A AK+G+ PK S FG GG A      A+    Q+ P YSPYS YGTGE+ ++ P +  +V     KV ES  R+ K+  YL+++ WEEVR EL+RQ YDLR +   LA    +P+ASKA K  ++D++ L+VA+RRK+ D +   Y  A  D  +F+K +
Sbjct:   69 PLAASAKTGDAPKASYFGFGGGASTLSEGAAYGSDQEAPLYSPYSVYGTGEDRVWVPNSKQEVGRKVKKVEESAGRIAKVKDYLDQQLWEEVRMELSRQTYDLRENMNSLASVSGNPDASKAAKKFYRDLDKLSVAARRKEQDAALGFYKDAVNDLKSFIKVV 231          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|223993775|ref|XP_002286571.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977886|gb|EED96212.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.2781 bits (225), Expect = 2.318e-19
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 0
Query:   47 GEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGT--GENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            GE P+ SVFG+ GD       A+    Q   TYSPYS YG    ++ALF+  NA ++      + ES+KR+  +  Y+EKKQW  V+ ELTR MY+ R + + LA   Q+PE  K  K+ FQ IE+ ++ +  K  D   AA + +    D F  +L
Sbjct:   58 GESPRFSVFGVIGDGTSYSEGAAYGSDQSAETYSPYSVYGKVGSKDALFEAGNAGEIARKKGYIVESQKRLKNLPGYVEKKQWFNVKDELTRYMYETRGAVRGLA---QTPEQKKLAKAFFQAIEEASLQATLKNGDKCAAASADSIKLLDQFYASL 211          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|299117621|emb|CBN75463.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 2.419e-19
Identity = 56/152 (36.84%), Postives = 86/152 (56.58%), Query Frame = 0
Query:   47 GEGPKQSVFG-LGGD----AASSPFVQDVPTYSPYSPYGTGENALFKPLN-ADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFL 192
            G G KQ+ FG +G D       S +  +  TYSPYSPY  G++AL+K  + A   K+    + +S+KR+  +  ++E K+WEE+R+ LT + Y LR +   LA +K  P+A+   K  ++DIE LTV +R+K       AY+ AQ     +L
Sbjct:   61 GTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADK--PQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYL 210          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|397631462|gb|EJK70163.1| (hypothetical protein THAOC_08500 [Thalassiosira oceanica])

HSP 1 Score: 90.5077 bits (223), Expect = 4.017e-19
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 0
Query:   47 GEGPKQSVFGLGGDA------ASSPFVQDVPTYSPYSPYGT--GENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            GE P+ SVFG+ GD       A+    Q    YSPYS YG     +AL+   NA +V+     + ES+KR+ K+  Y+E+K+W  V+ ELTR MY+ R + + LAE   +PE  K  KS FQ IE+ ++ +  K  D   AA + +    D F+ +L
Sbjct:   60 GESPRFSVFGVIGDGTSYSEGAAYGSDQSSAVYSPYSVYGNVGSSDALYSANNAGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTRYMYETRGAVRGLAE---TPEQKKIAKSFFQAIEEASLQATLKNQDKCAAASADSAKLLDQFVASL 213          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|676395075|ref|XP_009040815.1| (hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens] >gi|323448531|gb|EGB04428.1| hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens])

HSP 1 Score: 93.2041 bits (230), Expect = 1.026e-18
Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 0
Query:   48 EGPKQSVFGLGGDAAS----SPFVQDV--PTYSPYSPYG-TGE-NALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYS 182
            E PK S FG+GG+  +    + +  D     YSPYS YG  G+  A++K  N  +V    +   +S KRV K  +Y+EKK WE+VR+EL RQ+Y++R +   LA     PEA+ A K  +QD+E++ + S+RK+   +  AY+
Sbjct:   50 ESPKFSFFGIGGNGGTYSEGAMYGSDQKDAVYSPYSVYGKLGDPKAVYKKYNDKEVAFKKAMFADSSKRVAKTKQYIEKKSWEDVRSELERQVYNMRGTMNYLAAASGKPEATAAAKKFYQDMEEVNLLSKRKKQAAALDAYA 192          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|1210519950|dbj|GAX21201.1| (hypothetical protein FisN_26Lh159 [Fistulifera solaris] >gi|1210522454|dbj|GAX18857.1| hypothetical protein FisN_26Hh159 [Fistulifera solaris])

HSP 1 Score: 88.9669 bits (219), Expect = 1.363e-18
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   47 GEGPKQSVFGLGGDAAS----SPFVQDVPT--YSPYSPYG-TGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            GE P+ SVFGL GD +S    + +  D  +  YSPYS YG  G+ +LF P +        + + E+KKR+DK+ K++EKK W EV TEL R M + R + + LA   Q+PE  K   + F+ IE   + +RRK  +   A+   + A   AF+ ++
Sbjct:   47 GESPRFSVFGLIGDGSSYSEGAAYGTDQSSKLYSPYSVYGEAGDGSLFNPADPSIAGKKKAVLAETKKRLDKLPKFIEKKAWFEVTTELDRYMGETRAAVRYLA---QTPEQKKKATAFFKAIESTDINARRKNQEACAASQKESVAALAAFVSSI 199          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|215421034|dbj|BAG85211.1| (extrinsic protein in photosystem II [Chaetoceros gracilis])

HSP 1 Score: 87.8113 bits (216), Expect = 4.749e-18
Identity = 62/177 (35.03%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   26 MFFNFATMPLTSMPESALAKSGEGPKQSVFGLGGDAAS----SPFVQDVP--TYSPYSPYG-TGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            +F   A      +P +A A  GE P+ SVFGL GD  S    + +  D     YSPYS Y   GE +L+KP NA+ +    + + E+K R+ KI  Y++KK+W  V+ ELTR MY+ R + + L+ +    E ++     F+ +ED   A+  K+ D  +A+  +A A  DAF   L
Sbjct:   38 VFGKIAAAGAAFLPVAANAAVGESPRFSVFGLVGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDNAEYLARKKAVLAETKNRLQKIPAYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEV---FFRALEDTYGAATLKKGDAVKASNDKAIAALDAFTATL 211          
BLAST of EWM23838.1 vs. NCBI_GenBank
Match: gi|219119081|ref|XP_002180307.1| (oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408564|gb|EEC48498.1| oxygen-evolving enhancer protein 3 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 81.6481 bits (200), Expect = 6.585e-16
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 0
Query:   38 MPESALAKSGEGPKQSVFGLGGDAAS----SPFVQDVPT--YSPYSPYGTGEN--ALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 195
            +P +A A  GE P+ SVFGL GD  S    + +  D  +  YSPYS YG   N  +L+K  N + +    + + E++KR+ K+  Y+EKK+W EV TEL+R MY+ R +   L    +SPE  K   + F+ IE   +++R+K    + +A +   +  DAF  +L
Sbjct:   38 LPVAANAAVGESPRFSVFGLIGDGTSYSEGAAYGTDQASKLYSPYSVYGEVGNPDSLYKDTNPEYLARKKAILAETRKRLQKLPAYIEKKKWFEVTTELSRFMYETRGAIDFLG---KSPEQKKKAVAFFKAIEKTNLSARQKDQAAAASAAADTISTLDAFTSSL 200          
The following BLAST results are available for this feature:
BLAST of EWM23838.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105106|gb|EWM23838.1|7.061e-140100.00extrinsic protein in photosystem ii [Nannochlorops... [more]
gi|553187404|ref|XP_005854604.1|1.836e-139100.00extrinsic protein in photosystem II [Nannochlorops... [more]
gi|873226497|emb|CEM21093.1|2.570e-3442.94unnamed protein product [Vitrella brassicaformis C... [more]
gi|223993775|ref|XP_002286571.1|2.318e-1938.22predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299117621|emb|CBN75463.1|2.419e-1936.84conserved unknown protein [Ectocarpus siliculosus][more]
gi|397631462|gb|EJK70163.1|4.017e-1937.58hypothetical protein THAOC_08500 [Thalassiosira oc... [more]
gi|676395075|ref|XP_009040815.1|1.026e-1838.46hypothetical protein AURANDRAFT_72519 [Aureococcus... [more]
gi|1210519950|dbj|GAX21201.1|1.363e-1837.18hypothetical protein FisN_26Lh159 [Fistulifera sol... [more]
gi|215421034|dbj|BAG85211.1|4.749e-1835.03extrinsic protein in photosystem II [Chaetoceros g... [more]
gi|219119081|ref|XP_002180307.1|6.585e-1635.54oxygen-evolving enhancer protein 3 [Phaeodactylum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6847rna6847Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications