rna6844, rna6844 (mRNA) Nannochloropsis gaditana

Overview
Namerna6844
Unique Namerna6844
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationCM002469.1:624325..625535 -

Link to JBrowse

Properties
Property NameValue
Productserine threonine protein phosphatase type 2a regulatory subunit
Orig transcript idgnl|cribi|Naga_100273g10.3659.mrna
Orig protein idgnl|cribi|Naga_100273g10.3659
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:624325..625535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100273g10gene6616Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6844rna6844-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23843.1cds6828Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6844 ID=rna6844|Name=rna6844|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGGACCAAGTCATGCCCCTTCTAGAACGTTTCCTCATGGACGCTACCTG
TCCCGAAGTCAACGCCCGCCTGCACATCCTCTCCCGCCTTGCCGCCATCG
GCCCCTGGCTTCCCCCCCCACCCTCCGCACCGTCCTCCCCCTCTCCCTCG
ACCTCCTCCCTCCCCACCATCCTCCTCCACCTCCGGGAGGATGAGAATTG
GCGGCTCCGGAAAGGGGCCATCGAGGCCTTCCCCGTCTTGGCGGCGCACA
TGTCGTCGGAGCACCGCCTGGTGCACTTCGAACCCACACTCCTTCCCCCC
CTCCTCTCCGCTTTCCACGACCGGGTCGCACAGGTACGGGCAGCCGCCAC
CTTGGCCTTGGGCCGTGTGGCCCATATCACCGGTCCTGCCTTTGTGGAAG
GGAAAATCTGGCCGCGGGTGCTGGCGCAATACCGGCAATCTCGTTTTTAC
TTGATGCGGATGGCATTGTTGCATGCGCTGCAGTCCCTCCTTCACTGGTC
CTGGAGGCGACGCGGGACAAGGTCCCAAATGTGCGGTTTACTGCGGCTCA
GGTAG
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protein sequence of rna6844

>rna6844-protein ID=rna6844-protein|Name=rna6844|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MDKTDRAITGLANLSLTDSGSAAERSLEQSPSVLAADGARRREIDATGTA
GTKVACQDLEGMSPLEFFVEEIENEDVYVRLEAYRRVRLIAGALGPQMTE
QKLLPLLLVLVPLLTRLAGAEETVVREAAVASLLK
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mRNA from alignment at CM002469.1:624325..625535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6844 ID=rna6844|Name=rna6844|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp|location=Sequence derived from alignment at CM002469.1:624325..625535- (Nannochloropsis gaditana)
CTCTGTCGTGTCGATTGATTGCAGGGAGCGGGGCGGAGAGTTTGCCACGA
AAGTTGTAAAGAGTGCAACACACCGGGCCCGGGCCACGGCGGTGCGACAC
GAGAGAGCACACTGCTTAGGGCGTCGGAAGAATACTAGTCACGCGTCGAA
ATTCGAACCAGCATGGACAAGACAGGTGCGTGCACGGTGTCCCGCTTGTA
TCATGGCATGGGAAGGCAATATCGCGTGAAGCAGTGATTCCCGACAGGTG
GTACGGCCGCCACGGGGCCTACCCTCGCGAGTTTTCCTAGTGTGCCAATC
CCCTGATACCTCGCGTCGAAAGCCTTCGGTGCATGCCGCGTCTGACAGAA
AGCTATGTATACACGACACAGACCGGGCCATCACGGGCCTGGCCAACCTG
TCTTTGACGGACAGTGGGAGTGCAGCAGAGCGAAGTCTGGAGCAGAGCCC
GTCTGTTCTCGCAGCAGACGGCGCACGCAGAAGAGAGATTGATGCCACAG
GAACAGCAGGGACAAAGGTGGCGTGTCAGGATTTGGAAGGCATGTCGCCT
TTGGAATTTTTTGTGGAAGAAATCGAGAACGAGGATGTCTACGTCCGGCT
GGAGGCTTATCGGAGGGTCAGGCTGATTGCAGGCGCTCTGGGTCCACAGA
TGACAGAGCAAAAGCTCTTGCCTTTGTTGCTGGGTGAGAAAGGAGAGAGG
GAAGGAGGGATGGGGTGGGTGATCACCGGGTGGGGGGAACGAGGATGGAA
GTGGAAGGGAGGGACGTGGGGGCATGGCCCTGCGGAAGGAGGGGAAGGCG
CCAGCCAGGGAGAGGAGGACTAGTGGGCGGGATGGAGGTAGCGACCCCTC
TTTGGGAGGGACCGATTCTAGCCTTGAAACGAAACGGTTGTGTCGTGCGT
TCGCTTATGCACCCCCCCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTC
CCGCCCTCCCTCCTTCCCGCCCTCCCTCTCTCCCTCCCTCCCTCTCTCCC
TCCCTCCCTCCCGCCCTCGCCCGATCCTGCAGAGCATGCCTCCAGCCTGA
AAGACGACGAGATCCTTTTGACGCTGGCTCAAGGAGTGGGGAACGACGCC
TTCCTCCCCCTCGTCCCATCGCCCGCAGTCCTAGTGCCTCTCCTGACGCG
CCTGGCGGGGGCGGAGGAGACGGTGGTGAGGGAGGCGGCCGTGGCCTCTT
TGTTGAAGTAG
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Coding sequence (CDS) from alignment at CM002469.1:624325..625535-

>rna6844 ID=rna6844|Name=rna6844|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at CM002469.1:624325..625535- (Nannochloropsis gaditana)
TCCTAGTGCCTCTCCTGACGCGCCTGGCGGGGGCGGAGGAGACGGTGGTG
AGGGAGGCGGCCGTGGCCTCTTTGTTGAAGTAGACCGGGCCATCACGGGC
CTGGCCAACCTGTCTTTGACGGACAGTGGGAGTGCAGCAGAGCGAAGTCT
GGAGCAGAGCCCGTCTGTTCTCGCAGCAGACGGCGCACGCAGAAGAGAGA
TTGATGCCACAGGAACAGCAGGGACAAAGGTGGCGTGTCAGGATTTGGAA
GGCATGTCGCCTTTGGAATTTTTTGTGGAAGAAATCGAGAACGAGGATGT
CTACGTCCGGCTGGAGGCTTATCGGAGGGTCAGGCTGATTGCAGGCGCTC
TGGGTCCACAGATGACAGAGCAAAAGCTCTTGCCTTTGTTGCTGGATGGA
CAAGACAGTCCTAGTGCCTCTCCTGACGCGCCTGGCGGGGGCGGAGGAGA
CGGTGGTGAGGGAGGCGGCCGTGGCCTCTTTGTTGAAGTAGACCGGGCCA
TCACGGGCCTGGCCAACCTGTCTTTGACGGACAGTGGGAGTGCAGCAGAG
CGAAGTCTGGAGCAGAGCCCGTCTGTTCTCGCAGCAGACGGCGCACGCAG
AAGAGAGATTGATGCCACAGGAACAGCAGGGACAAAGGTGGCGTGTCAGG
ATTTGGAAGGCATGTCGCCTTTGGAATTTTTTGTGGAAGAAATCGAGAAC
GAGGATGTCTACGTCCGGCTGGAGGCTTATCGGAGGGTCAGGCTGATTGC
AGGCGCTCTGGGTCCACAGATGACAGAGCAAAAGCTCTTGCCTTTGTTGC
TGGATGGACAAGACAGTCCTAGTGCCTCTCCTGACGCGCCTGGCGGGGGC
GGAGGAGACGGTGGTGAGGGAGGCGGCCGTGGCCTCTTTGTTGAAGTAGA
CCGGGCCATCACGGGCCTGGCCAACCTGTCTTTGACGGACAGTGGGAGTG
CAGCAGAGCGAAGTCTGGAGCAGAGCCCGTCTGTTCTCGCAGCAGACGGC
GCACGCAGAAGAGAGATTGATGCCACAGGAACAGCAGGGACAAAGGTGGC
GTGTCAGGATTTGGAAGGCATGTCGCCTTTGGAATTTTTTGTGGAAGAAA
TCGAGAACGAGGATGTCTACGTCCGGCTGGAGGCTTATCGGAGGGTCAGG
CTGATTGCAGGCGCTCTGGGTCCACAGATGACAGAGCAAAAGCTCTTGCC
TTTGTTGCTGGATGGACAAGACAG
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Synonyms
Publications