EWM23843.1, cds6828 (CDS) Nannochloropsis gaditana

Overview
NameEWM23843.1
Unique Namecds6828
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:625361..625373 -
Alignment locationCM002469.1:624853..625164 -
Alignment locationCM002469.1:624325..624407 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23843.1
Productserine threonine protein phosphatase type 2a regulatory subunit
Orig transcript idgnl|cribi|Naga_100273g10.3659.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:625361..625373 -
CM002469.1supercontigCM002469.1:624853..625164 -
CM002469.1supercontigCM002469.1:624325..624407 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR021133HEAT_type_2
IPR011989ARM-like
Homology
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BLAST of EWM23843.1 vs. NCBI_GenBank
Match: gi|585105111|gb|EWM23843.1| (serine threonine protein phosphatase type 2a regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 265.003 bits (676), Expect = 1.566e-89
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MDKTDRAITGLANLSLTDSGSAAERSLEQSPSVLAADGARRREIDATGTAGTKVACQDLEGMSPLEFFVEEIENEDVYVRLEAYRRVRLIAGALGPQMTEQKLLPLLLVLVPLLTRLAGAEETVVREAAVASLLK 135
            MDKTDRAITGLANLSLTDSGSAAERSLEQSPSVLAADGARRREIDATGTAGTKVACQDLEGMSPLEFFVEEIENEDVYVRLEAYRRVRLIAGALGPQMTEQKLLPLLLVLVPLLTRLAGAEETVVREAAVASLLK
Sbjct:    1 MDKTDRAITGLANLSLTDSGSAAERSLEQSPSVLAADGARRREIDATGTAGTKVACQDLEGMSPLEFFVEEIENEDVYVRLEAYRRVRLIAGALGPQMTEQKLLPLLLVLVPLLTRLAGAEETVVREAAVASLLK 135
The following BLAST results are available for this feature:
BLAST of EWM23843.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105111|gb|EWM23843.1|1.566e-89100.00serine threonine protein phosphatase type 2a regul... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6844rna6844Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications