rna6843, rna6843 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6843
Unique Name	rna6843
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	264
Alignment location	CM002469.1:622819..623530 -

Link to JBrowse

Properties


Property Name	Value
Product	serine threonine-protein phosphatase 2a 65 kda regulatory subunit a alpha isoform-like protein
Orig transcript id	gnl\|cribi\|Naga_102010g1.959.mrna
Orig protein id	gnl\|cribi\|Naga_102010g1.959
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:622819..623530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102010g1	gene6615	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6843	rna6843-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23846.1	cds6827	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:622819..623530-
coding sequence from alignment at CM002469.1:622819..623530-

mRNA sequence

>rna6843 ID=rna6843|Name=rna6843|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGGAAAGTGATTCTGTCTTGGCCGAAGTCTCCGGCTTCCTCGACGCTTC
CTCCCTCCAGACCTCCGTCACGCCCTGCCTCGGGGCCATGGCCGAGAAGG
ATGCGGACGGTGACGTGCGCTTTTATGCGGCTTTGGCGCTGCAGGGGAAA
GAGGAGGTATCGATGGCTAGTGGGGAGGACAACCTGTCCGCCCGATCGGT
GGCGGTGCTGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAAGGGACCAAG
GGGGAGGGAGTTGA

protein sequence of rna6843

>rna6843-protein ID=rna6843-protein|Name=rna6843|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPS
TSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPP
LLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFY
LMRMALLHALQSLLHWSWRRRGTRSQMCGLLRLR

mRNA from alignment at CM002469.1:622819..623530-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6843 ID=rna6843|Name=rna6843|organism=Nannochloropsis gaditana|type=mRNA|length=712bp|location=Sequence derived from alignment at CM002469.1:622819..623530- (Nannochloropsis gaditana)
ATGGACCAAGTCATGCCCCTTCTAGAACGTTTCCTCATGGACGCTACCTG
TCCCGAAGTCAACGCCCGCCTGCACATCCTCTCCCGCCTTGCCGCCATCG
GCCCCTGGCTTCCCCCCCCACCCTCCGCACCGTCCTCCCCCTCTCCCTCG
ACCTCCTCCCTCCCCACCATCCTCCTCCACCTCCGGGAGGATGAGAATTG
GCGGCTCCGGAAAGGGGCCATCGAGGCCTTCCCCGTCTTGGCGGCGCACA
TGTCGTCGGAGCACCGCCTGGTGCACTTCGAACCCACACTCCTTCCCCCC
CTCCTCTCCGCTTTCCACGACCGGGTCGCACAGGTACGGGCAGCCGCCAC
CTTGGCCTTGGGCCGTGTGGCCCATATCACCGGTCCTGCCTTTGTGGAAG
GGAAAATCTGGCCGCGGGTGCTGGCGCAATACCGGCAATCTCGTTTTTAC
TTGATGCGGATGGCATTGTTGCATGCGCTGCAGGTGGGTGGGGGAGGGAG
ACGGGTCGGACGAAGCTTTCCCTGTCGGTCATTCCCGCCCGTCCATTTTG
TCTTCCCTCCTTTCCTCCCTCCCTCCCTCCCTCTTTCCTTCCCTCAGTCC
CTCCTTGTAAAGGGAGAGACCACGGCTTCCCTTACTCAAGAAATATTAGC
ACTGGTCCTGGAGGCGACGCGGGACAAGGTCCCAAATGTGCGGTTTACTG
CGGCTCAGGTAG

Coding sequence (CDS) from alignment at CM002469.1:622819..623530-

>rna6843 ID=rna6843|Name=rna6843|organism=Nannochloropsis gaditana|type=CDS|length=1665bp|location=Sequence derived from alignment at CM002469.1:622819..623530- (Nannochloropsis gaditana)
CACTGGTCCTGGAGGCGACGCGGGACAAGGTCCCAAATGTGCGGTTTACT
GCGGCTCAGGTAGTCCCTCCTTATGGACCAAGTCATGCCCCTTCTAGAAC
GTTTCCTCATGGACGCTACCTGTCCCGAAGTCAACGCCCGCCTGCACATC
CTCTCCCGCCTTGCCGCCATCGGCCCCTGGCTTCCCCCCCCACCCTCCGC
ACCGTCCTCCCCCTCTCCCTCGACCTCCTCCCTCCCCACCATCCTCCTCC
ACCTCCGGGAGGATGAGAATTGGCGGCTCCGGAAAGGGGCCATCGAGGCC
TTCCCCGTCTTGGCGGCGCACATGTCGTCGGAGCACCGCCTGGTGCACTT
CGAACCCACACTCCTTCCCCCCCTCCTCTCCGCTTTCCACGACCGGGTCG
CACAGGTACGGGCAGCCGCCACCTTGGCCTTGGGCCGTGTGGCCCATATC
ACCGGTCCTGCCTTTGTGGAAGGGAAAATCTGGCCGCGGGTGCTGGCGCA
ATACCGGCAATCTCGTTTTTACTTGATGCGGATGGCATTGTTGCATGCGC
TGCAGCACTGGTCCTGGAGGCGACGCGGGACAAGGTCCCAAATGTGCGGT
TTACTGCGGCTCAGGTAGTCCCTCCTTATGGACCAAGTCATGCCCCTTCT
AGAACGTTTCCTCATGGACGCTACCTGTCCCGAAGTCAACGCCCGCCTGC
ACATCCTCTCCCGCCTTGCCGCCATCGGCCCCTGGCTTCCCCCCCCACCC
TCCGCACCGTCCTCCCCCTCTCCCTCGACCTCCTCCCTCCCCACCATCCT
CCTCCACCTCCGGGAGGATGAGAATTGGCGGCTCCGGAAAGGGGCCATCG
AGGCCTTCCCCGTCTTGGCGGCGCACATGTCGTCGGAGCACCGCCTGGTG
CACTTCGAACCCACACTCCTTCCCCCCCTCCTCTCCGCTTTCCACGACCG
GGTCGCACAGGTACGGGCAGCCGCCACCTTGGCCTTGGGCCGTGTGGCCC
ATATCACCGGTCCTGCCTTTGTGGAAGGGAAAATCTGGCCGCGGGTGCTG
GCGCAATACCGGCAATCTCGTTTTTACTTGATGCGGATGGCATTGTTGCA
TGCGCTGCAGCACTGGTCCTGGAGGCGACGCGGGACAAGGTCCCAAATGT
GCGGTTTACTGCGGCTCAGGTAGTCCCTCCTTATGGACCAAGTCATGCCC
CTTCTAGAACGTTTCCTCATGGACGCTACCTGTCCCGAAGTCAACGCCCG
CCTGCACATCCTCTCCCGCCTTGCCGCCATCGGCCCCTGGCTTCCCCCCC
CACCCTCCGCACCGTCCTCCCCCTCTCCCTCGACCTCCTCCCTCCCCACC
ATCCTCCTCCACCTCCGGGAGGATGAGAATTGGCGGCTCCGGAAAGGGGC
CATCGAGGCCTTCCCCGTCTTGGCGGCGCACATGTCGTCGGAGCACCGCC
TGGTGCACTTCGAACCCACACTCCTTCCCCCCCTCCTCTCCGCTTTCCAC
GACCGGGTCGCACAGGTACGGGCAGCCGCCACCTTGGCCTTGGGCCGTGT
GGCCCATATCACCGGTCCTGCCTTTGTGGAAGGGAAAATCTGGCCGCGGG
TGCTGGCGCAATACCGGCAATCTCGTTTTTACTTGATGCGGATGGCATTG
TTGCATGCGCTGCAG

Synonyms

Publications