EWM23846.1, cds6827 (CDS) Nannochloropsis gaditana

Overview
NameEWM23846.1
Unique Namecds6827
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:623048..623530 -
Alignment locationCM002469.1:622925..622933 -
Alignment locationCM002469.1:622819..622881 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23846.1
Productserine threonine-protein phosphatase 2a 65 kda regulatory subunit a alpha isoform-like protein
Orig transcript idgnl|cribi|Naga_102010g1.959.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:623048..623530 -
CM002469.1supercontigCM002469.1:622925..622933 -
CM002469.1supercontigCM002469.1:622819..622881 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR021133HEAT_type_2
IPR011989ARM-like
Homology
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|585105115|gb|EWM23846.1| (serine threonine-protein phosphatase 2a 65 kda regulatory subunit a alpha isoform-like protein [Nannochloropsis gaditana])

HSP 1 Score: 366.311 bits (939), Expect = 3.628e-128
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSLLHWSWRRRGTRSQMCGLLRLR 184
            MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSLLHWSWRRRGTRSQMCGLLRLR
Sbjct:    1 MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSLLHWSWRRRGTRSQMCGLLRLR 184          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|298710230|emb|CBJ26305.1| (protein phosphatase 2A regulatory subunit [Ectocarpus siliculosus])

HSP 1 Score: 86.6557 bits (213), Expect = 1.516e-16
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 0
Query:    1 MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            M  ++P+L  FL D +      RLHIL +L  +  W+P         + +   LP ++L L +D  WR+R+  + + P+L   M   +    FE  LL   L A+ D V +VR  A+  L R+  + G  +++ K+ PR+   Y +S FYL+R+A+L+AL+ L
Sbjct:  359 MTHILPMLLAFLRDESA---EVRLHILLQLDGLAEWMP---------AMAEQVLP-LVLELGQDIIWRVRRAVMVSVPLLTERMGVNY----FEENLLELYLQAYRDSVNEVRVGASEGLQRLCKVCGADWLQEKVLPRIHGFYDESTFYLIRIAILNALKKL 504          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|669172407|ref|XP_008621552.1| (hypothetical protein SDRG_17095 [Saprolegnia diclina VS20] >gi|530726776|gb|EQC25018.1| hypothetical protein SDRG_17095 [Saprolegnia diclina VS20])

HSP 1 Score: 78.1814 bits (191), Expect = 1.374e-13
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0
Query:    4 VMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            ++P++ +FL D     V+ RL++L R++A+ PW+          S   + LP I   L +D  WR+R+  I A P L + + +     +F+  LL   L+AF D V++VR + T  L  + H+ G  ++   I P++   Y  S  Y  R+ + HAL  L
Sbjct:  354 LVPIMLQFLRDDV---VDVRLNVLKRMSAVSPWMH---------SFEGTLLPAIT-DLSKDLQWRVREAVILALPSLVSSLGA----TYFQEHLLEMFLNAFQDMVSEVRLSTTKILQEILHVVGSDYILESILPKLAQIYDSSIIYQERVNVFHALTQL 496          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|813143206|ref|XP_012199548.1| (hypothetical protein SPRG_19729 [Saprolegnia parasitica CBS 223.65] >gi|641535947|gb|KDO29847.1| hypothetical protein SPRG_19729 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-13
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0
Query:    4 VMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            ++P++ +FL D     V+ RL++L R++A+ PW+          S   + LP I   L +D  WR+R+  I A P L + + +     +F+  LL   L+AF D V++VR + T  L  + H+ G  ++   I P++   Y  S  Y  R+ + HAL  L
Sbjct:  355 LVPIMLQFLRDDV---VDVRLNVLKRMSAVSPWMH---------SFEGTLLPAIT-DLSKDLQWRVREAVILALPSLVSSLGA----TYFQEHLLEMFLNAFQDMVSEVRLSTTKILQEILHVVGSEYILESILPKLAQIYDSSIIYQERVNVFHALTQL 497          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|673018786|ref|XP_008863354.1| (hypothetical protein H310_01825 [Aphanomyces invadans] >gi|574480268|gb|ETW07261.1| hypothetical protein H310_01825 [Aphanomyces invadans])

HSP 1 Score: 77.411 bits (189), Expect = 2.590e-13
Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 0
Query:    2 DQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            + ++P+L +FL D     V+ARL++L R+  I PW+          S  ++ LP I   L +D  WR+R+  I A P L   + S     +F+  LL   L+AF D V++VR + T  L  +  + G  ++   + P++   Y  S  Y  R+ + HAL  L
Sbjct:  352 NSLIPILLQFLRDDV---VDARLNVLKRMDNISPWMS---------SYESTLLPAIT-DLSKDLQWRVREAVILALPSLVTTLGS----AYFQQHLLDMFLNAFQDMVSEVRLSTTKILRNILDVVGSEYILESVLPKLTKIYESSVTYQERVNVFHALGQL 496          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|1173942961|gb|OQR91884.1| (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A [Achlya hypogyna])

HSP 1 Score: 76.6406 bits (187), Expect = 5.019e-13
Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = 0
Query:    4 VMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            ++P++ +FL D     V+ RL++L R++A+ PW+    S         + LP I   L +D  WR+R+  I A P L + + +     +F+  LL   L+AF D V++VR + T  L  +  + G  +V   I P++   Y  S  Y  R+ + HAL  L
Sbjct:  354 LVPIMLQFLRDDV---VDVRLNVLKRMSAVSPWMHAFES---------TLLPAIT-DLSKDLQWRVREAVILALPSLVSSLGA----TYFQEHLLEMFLNAFQDMVSEVRLSTTKILKEILQVVGSEYVLESILPKLAQIYDSSIIYQERVNVFHALTQL 496          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|698817672|ref|XP_009841865.1| (hypothetical protein H257_15444 [Aphanomyces astaci] >gi|574103096|gb|ETV68640.1| hypothetical protein H257_15444 [Aphanomyces astaci])

HSP 1 Score: 75.485 bits (184), Expect = 1.249e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 0
Query:    4 VMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            ++P+L +FL D     V+ARL++L R+  I PW+          S  ++ LP I   L +D  WR+R+  I A P L   + +     +F+  LL   L+AF D V++VR + T  L  +  + G  +V   + P++   Y  S  Y  R+ + HAL  L
Sbjct:  354 LIPILLQFLRDDV---VDARLNVLKRMDNISPWMS---------SYESTLLPAIT-DLSKDLQWRVREAVILALPSLVTTLGA----AYFQQHLLDMFLNAFQDMVSEVRLSTTKILRDILDVVGSDYVLESVLPKLSKIYENSVTYQERVNVFHALGQL 496          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|1173957549|gb|OQS04051.1| (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A [Thraustotheca clavata])

HSP 1 Score: 71.2478 bits (173), Expect = 3.749e-11
Identity = 46/160 (28.75%), Postives = 80/160 (50.00%), Query Frame = 0
Query:    4 VMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            ++P++ +FL D     V+ RL++L R++++  W+          S   + LP I   L +D  WR+R+  I A P L + + +     +F+  LL   L+AF D V++VR + T  L  +  + G  ++   I P++   Y  S  Y  R+ + HAL  L
Sbjct:  358 LVPIMLQFLRDDV---VDVRLNVLKRMSSVSVWMH---------SFEGTLLPAIT-DLSKDLQWRVREAVILALPSLVSSLGA----AYFQEHLLEMFLNAFQDMVSEVRLSTTKILKDILQVVGSDYILESILPKLAQIYDSSIIYQERVNVFHALSQL 500          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|952521293|gb|KRT81468.1| (HEAT domain-containing protein [Oryctes borbonicus])

HSP 1 Score: 68.1662 bits (165), Expect = 2.480e-10
Identity = 56/174 (32.18%), Postives = 77/174 (44.25%), Query Frame = 0
Query:    1 MDQVMPLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSLLHWSWRRRGTR 174
            ++ ++PL    L D  CPEV  RL+I+S L  +   +            S S LP I+  L ED  WR+R   IE  P+LA  +  E     F+  L    ++   D V  +R AATL L ++    G  + E  I P+VLA  R    YL RM  L  +  L         TR
Sbjct:  101 IEHLLPLFLAQLKD-ECPEV--RLNIISNLDCVNEVI-------GIQQLSQSLLPAIV-ELAEDSKWRVRSAIIEYMPLLAGQLGQE----FFDEKLNALCMTWLMDHVFAIREAATLNLRKLVDQFGAEWAENTIIPKVLAMSRDQN-YLYRMTCLFCINVLAEACGSDISTR 258          
BLAST of EWM23846.1 vs. NCBI_GenBank
Match: gi|635369993|emb|CCI41814.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 67.781 bits (164), Expect = 5.657e-10
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 0
Query:    6 PLLERFLMDATCPEVNARLHILSRLAAIGPWLPPPPSAPSSPSPSTSSLPTILLHLREDENWRLRKGAIEAFPVLAAHMSSEHRLVHFEPTLLPPLLSAFHDRVAQVRAAATLALGRVAHITGPAFVEGKIWPRVLAQYRQSRFYLMRMALLHALQSL 163
            P+L  FL D     V+ RL+IL R+  + PW+          S     LP I   L  D  WR+R+  + + P L   + +++    F+  LL   L+A+ D V +VR +AT  L ++ +  G  F+   + PR+ A   +S  Y  R+ +LHAL+ L
Sbjct: 2053 PMLLLFLRDEV---VDVRLNILKRMENLAPWMS---------SFEDVFLPAIA-DLARDLQWRVREAVVLSIPSLVGSLGTQY----FQEHLLDIYLNAYSDMVGEVRLSATKILPQLVNTAGNEFMLQHVLPRLTAILEKSIIYQERVNVLHALEQL 2193          
The following BLAST results are available for this feature:
BLAST of EWM23846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105115|gb|EWM23846.1|3.628e-128100.00serine threonine-protein phosphatase 2a 65 kda reg... [more]
gi|298710230|emb|CBJ26305.1|1.516e-1632.52protein phosphatase 2A regulatory subunit [Ectocar... [more]
gi|669172407|ref|XP_008621552.1|1.374e-1330.63hypothetical protein SDRG_17095 [Saprolegnia dicli... [more]
gi|813143206|ref|XP_012199548.1|1.443e-1330.63hypothetical protein SPRG_19729 [Saprolegnia paras... [more]
gi|673018786|ref|XP_008863354.1|2.590e-1330.86hypothetical protein H310_01825 [Aphanomyces invad... [more]
gi|1173942961|gb|OQR91884.1|5.019e-1330.63serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
gi|698817672|ref|XP_009841865.1|1.249e-1231.25hypothetical protein H257_15444 [Aphanomyces astac... [more]
gi|1173957549|gb|OQS04051.1|3.749e-1128.75serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
gi|952521293|gb|KRT81468.1|2.480e-1032.18HEAT domain-containing protein [Oryctes borbonicus... [more]
gi|635369993|emb|CCI41814.1|5.657e-1031.01unnamed protein product [Albugo candida][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6843rna6843Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications