EWM23862.1, cds6811 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23862.1
Unique Name	cds6811
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002469.1:592524..592671 -
Alignment location	CM002469.1:592338..592452 -
Alignment location	CM002469.1:592097..592265 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23862.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100202g2.187.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:592524..592671 -
CM002469.1	supercontig	CM002469.1:592338..592452 -
CM002469.1	supercontig	CM002469.1:592097..592265 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23862.1 vs. NCBI_GenBank
Match: gi|585105138|gb|EWM23862.1| (hypothetical protein Naga_100202g2 [Nannochloropsis gaditana])

HSP 1 Score: 293.893 bits (751), Expect = 8.139e-101
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query:    1 MARDDGLRVTRTSPSRRNILTPCPSEKQSCFPVQANQGKTGDYSRHRNGGRRARATYSRKSDSTRPRQKIVSFATHPILKHTFYGAKIATCRLLELAGLCLTNLGGVPSFLALDIIVKEFTDGYPSRLDSERCRLGIFVGFIV 143
            MARDDGLRVTRTSPSRRNILTPCPSEKQSCFPVQANQGKTGDYSRHRNGGRRARATYSRKSDSTRPRQKIVSFATHPILKHTFYGAKIATCRLLELAGLCLTNLGGVPSFLALDIIVKEFTDGYPSRLDSERCRLGIFVGFIV
Sbjct:    1 MARDDGLRVTRTSPSRRNILTPCPSEKQSCFPVQANQGKTGDYSRHRNGGRRARATYSRKSDSTRPRQKIVSFATHPILKHTFYGAKIATCRLLELAGLCLTNLGGVPSFLALDIIVKEFTDGYPSRLDSERCRLGIFVGFIV 143

The following BLAST results are available for this feature:

BLAST of EWM23862.1 vs. NCBI_GenBank

BLAST of EWM23862.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585105138\|gb\|EWM23862.1\|	8.139e-101	100.00	hypothetical protein Naga_100202g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6827	rna6827	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications