rna6827, rna6827 (mRNA) Nannochloropsis gaditana

Overview
Namerna6827
Unique Namerna6827
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1776
Alignment locationCM002469.1:592097..592671 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100202g2.187.mrna
Orig protein idgnl|cribi|Naga_100202g2.187
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:592097..592671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100202g2gene6599Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6827rna6827-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23862.1cds6811Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6827 ID=rna6827|Name=rna6827|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
TCAATTGCAAGGTTCTTGTGGAAAGTTCTGTTGCATGGTTAACCCGCATT
GCATGGGAAGCAACGAGGTGCCGTCTTCTATCATCGTTGTTTGGCTTCTG
GAAGACTCACTAGCATCACTCTCCTTCCAGTAGGTTTTCCCGATATAGGA
TGCTTTTGTCGACAGGACGGCAGTTTACACAATGGGTCGGGGTTGTCTCG
AGCTCGACTGTCAGTATATTGAGGGGAAGCAAGCGCAGCTTGGGTAGCTT
CACGACGCCTTTGGCCTCCATGCGGCCTGGGCCACATGCCGTGGATGGGC
GTAGGCCTCACGGCAACACGAGCAAGACAAGCCTTACACCTACCCGAGGA
TGGAGGAGGGGTGTATCACGAGAGCCTGCGTGCCTCTACATGGGCTGGAA
TCATTTTTGGGTGCGTTTCACACCACATAACAGAGGCAGATTTGCCTCCC
TTTCCAGCCAAGCTAGCCCACAGTCAAATCTGAAGCAATCCAAAACCGGA
ATGGGCATATCCCGACGCGGTACCCCACCCTCTTCTCCCCTAGCTGCATC
TAAGCCCTCCACCGGCAGCCTGGAAGTCGACGGGGAAGTCGACAGCCTGA
CGACGGATCCGCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCCCTTTGCCC
GTCATCGAGCCCAGTGGTGGGCGCGTTAGTGTCATGGCTTTCTACGTAGG
CCAGAATTTGGACTTGGTTTCGGTCGTGCAAGCCAATTTTCTCTCCCAGC
AAGGCTATAAGATGAGTGACGATCTACTGCTGGTCCCCTTGGAGGACAAG
GGGGAAAGAAAGCACAGTTCCCAGGAAGGGACGGTATGGAAGAACGTCCA
GAGCGCCTTGGTTGTCTTCAAGCACGGCTCGGTCGTGTTCTTCAACGTGC
CGGACGGGGAGCAGGCCAAGTACTTGCACTCCTTGTCCCGGCACTGTGGG
GAGGTTGTGCCTCAGTCGCACCGTTTCCGGGAGACGCTCGAGTGCTGGGT
GCGCCCGTGGCAGGAGAAATACCACGTGATGGGCCAGGATGTGGTGCAGT
TGCGTGAACTCAACGAGGACTCGATCAAGGTGCTGGCGGACGTAATAGGG
CATTCCGTGGCGCTGAACTTCTACAACAAGAAAGCGGATAGGATGCTGGA
GGACTTCCGGGTATTGAACAACAGCGTGGAGGGCTCGGGCGTCTTCACGG
AGATGGACAAAAAGGATCTGTTCAAGCTGGTGGCGTTGAACAACAAAATT
TTGACCGACGCCATGTCCTCCGGGCTTCTAGAACAATCGAAGCCGGCCTG
GAACTTCAACCGGCTGGACGCGCTTTGGAACGACCTCAGGGATGAGTTCA
GCATCGGGGAGCGGTTTGGCAAAGTCGAACACAAAATCTCGCACGTGCAA
AGCAACACGAAGTTTTTCCTGGAGGTCCTCAATCACCAGAAAAGCAACAA
ATTGGAATGGATCATCATTGTGCTGATTGCGGCGGAAATAGTTCTGTCTT
GTATAGACCTGTACCATCAGATTTTGGTCCAGTAAGAGGTGGTGCAATAG
ATTGGAAAAAAGAGAGCGCGCAGGAAATGCGCCGCAAGATCATCGAATTC
ACTGCATTAAATGCATCATTCTTTTTGTGGGAAAGGGTTTGCCTAATTAC
AAGTCAACGTCTTAAAGAAAATGTACAGTGCGAGCACGTTTTGTGTCTGA
CATCCGCTTGGTGACTTATTCTTTGTAGGGCAGGACCGAGTTGTGAGTGT
TGACAAATCAAACGATAAACCCCACA
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protein sequence of rna6827

>rna6827-protein ID=rna6827-protein|Name=rna6827|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MARDDGLRVTRTSPSRRNILTPCPSEKQSCFPVQANQGKTGDYSRHRNGG
RRARATYSRKSDSTRPRQKIVSFATHPILKHTFYGAKIATCRLLELAGLC
LTNLGGVPSFLALDIIVKEFTDGYPSRLDSERCRLGIFVGFIV
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mRNA from alignment at CM002469.1:592097..592671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6827 ID=rna6827|Name=rna6827|organism=Nannochloropsis gaditana|type=mRNA|length=575bp|location=Sequence derived from alignment at CM002469.1:592097..592671- (Nannochloropsis gaditana)
ATGGCGAGGGATGACGGCCTACGGGTGACACGGACGTCACCTTCCCGAAG
GAACATCCTAACACCCTGTCCATCAGAAAAACAGTCTTGTTTCCCCGTAC
AAGCCAACCAAGGGAAGACAGGAGACTACTCAAGACACAGAAATGGCGGT
GCAGTGGTCGTTGAACCCCCCAAAATTCTCCCTCTCTCCCACGTCTGGAC
CTGAACTTTCGATGAAAAGGACGGAGAGCAAGGGCAACATACTCTAGGAA
GTCAGATTCGACCCGCCCAAGGCAAAAAATTGTGTCCTTCGCCACACATC
CCATCCTGAAGCACACCTTTTACGGTGCTAAAATGTATACAACACACGGT
CCGGGTGTTGCCTCTTGTTTAGGGGTTTCGATGTGTGATAGGATAGGATG
AGGAAGAGCGACGTGTCGGCTGCTCGAGCTTGCTGGATTATGCCTGACGA
ATTTGGGGGGGGTGCCTTCTTTTTTGGCACTAGACATAATAGTAAAAGAG
TTCACAGACGGATATCCATCAAGGCTGGACAGTGAAAGATGCCGGCTTGG
AATCTTTGTGGGGTTTATCGTTTGA
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Coding sequence (CDS) from alignment at CM002469.1:592097..592671-

>rna6827 ID=rna6827|Name=rna6827|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002469.1:592097..592671- (Nannochloropsis gaditana)
AGCGACGTGTCGGCTGCTCGAGCTTGCTGGATTATGCCTGACGAATTTGG
GGGGGGTGCCTTCTTTTTTGGCACTAGACATAATAGTAAAAGAGTTCACA
GACGGATATCCATCAAGGCTGGACAGTGAAAGATGCCGGCTTGGAATCTT
TGTGGGGTTTATCGTTTGAGACGGAGAGCAAGGGCAACATACTCTAGGAA
GTCAGATTCGACCCGCCCAAGGCAAAAAATTGTGTCCTTCGCCACACATC
CCATCCTGAAGCACACCTTTTACGGTGCTAAAATATGGCGAGGGATGACG
GCCTACGGGTGACACGGACGTCACCTTCCCGAAGGAACATCCTAACACCC
TGTCCATCAGAAAAACAGTCTTGTTTCCCCGTACAAGCCAACCAAGGGAA
GACAGGAGACTACTCAAGACACAGAAATGGCGAGCGACGTGTCGGCTGCT
CGAGCTTGCTGGATTATGCCTGACGAATTTGGGGGGGGTGCCTTCTTTTT
TGGCACTAGACATAATAGTAAAAGAGTTCACAGACGGATATCCATCAAGG
CTGGACAGTGAAAGATGCCGGCTTGGAATCTTTGTGGGGTTTATCGTTTG
AGACGGAGAGCAAGGGCAACATACTCTAGGAAGTCAGATTCGACCCGCCC
AAGGCAAAAAATTGTGTCCTTCGCCACACATCCCATCCTGAAGCACACCT
TTTACGGTGCTAAAATATGGCGAGGGATGACGGCCTACGGGTGACACGGA
CGTCACCTTCCCGAAGGAACATCCTAACACCCTGTCCATCAGAAAAACAG
TCTTGTTTCCCCGTACAAGCCAACCAAGGGAAGACAGGAGACTACTCAAG
ACACAGAAATGGCGAGCGACGTGTCGGCTGCTCGAGCTTGCTGGATTATG
CCTGACGAATTTGGGGGGGGTGCCTTCTTTTTTGGCACTAGACATAATAG
TAAAAGAGTTCACAGACGGATATCCATCAAGGCTGGACAGTGAAAGATGC
CGGCTTGGAATCTTTGTGGGGTTTATCGTTTGAGACGGAGAGCAAGGGCA
ACATACTCTAGGAAGTCAGATTCGACCCGCCCAAGGCAAAAAATTGTGTC
CTTCGCCACACATCCCATCCTGAAGCACACCTTTTACGGTGCTAAAATAT
GGCGAGGGATGACGGCCTACGGGTGACACGGACGTCACCTTCCCGAAGGA
ACATCCTAACACCCTGTCCATCAGAAAAACAGTCTTGTTTCCCCGTACAA
GCCAACCAAGGGAAGACAGGAGACTACTCAAGACACAGAAATGGCG
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Synonyms
Publications